RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	TRIM9	Q9C026	710 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	NDEL1	Q9GZM8	345 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	ROGDI	Q9GZN7	287 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	GAL3ST2	Q9H3Q3	398 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	MRPS30	Q9NP92	439 aa	Known RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	SMOX	Q9NWM0	555 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	PIPOX	Q9P0Z9	390 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	BCAP29	Q9UHQ4	241 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	ZNF639	Q9UID6	485 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	PSORS1C1	Q9UIG5	152 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	VANGL2	Q9ULK5	521 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	DDX19B	Q9UMR2	479 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	RASD1	Q9Y272	281 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	B3GALT5	Q9Y2C3	310 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	MAD1L1	Q9Y6D9	718 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	RNF222	A6NCQ9	220 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	DDTL	A6NHG4	134 aa	Predicted RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	TEX46	H3BTG2	121 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	TMEM189-UBE2V1	I3L0A0	370 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440		J3QR06	171 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SLC16A5	O15375	505 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	ZSCAN12	O43309	604 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	TRAPPC3	O43617	180 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	KDELR3	O43731	214 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	ATP6AP2	O75787	350 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	H6PD	O95479	791 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	TSPAN12	O95859	305 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	CCNO	P22674	350 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	HRH2	P25021	359 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	NAA10	P41227	235 aa	Predicted RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	CCT3	P49368	545 aa	Known RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	VBP1	P61758	197 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	IRF8	Q02556	426 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	PLOD1	Q02809	727 aa	Predicted RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	CFHR3	Q02985	330 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	MBTD1	Q05BQ5	628 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SLC3A1	Q07837	685 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	IL10RB	Q08334	325 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	UBE2V1	Q13404	147 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	DMC1	Q14565	340 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	PON2	Q15165	354 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	PTPRR	Q15256	657 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	ITPRIPL2	Q3MIP1	535 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	C20orf194	Q5TEA3	1177 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	GPR157	Q5UAW9	335 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SNRNP48	Q6IEG0	339 aa	Known RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	KIRREL2	Q6UWL6	708 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	TMEM107	Q6UX40	140 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	GPRIN3	Q6ZVF9	776 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	CENPU	Q71F23	418 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SFTPA1	Q8IWL2	248 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	LRRC8A	Q8IWT6	810 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	CHERP	Q8IWX8	916 aa	Known RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	RYBP	Q8N488	228 aa	Predicted RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	LINC01465	Q8N7H1	131 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	ZNF781	Q8N8C0	355 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	OR7G1	Q8NGA0	311 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	OR52N4	Q8NGI2	321 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	OR4A15	Q8NGL6	344 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	OR13C9	Q8NGT0	318 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	RHEBL1	Q8TAI7	183 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SCARB1	Q8WTV0	552 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	CACNG8	Q8WXS5	425 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	ST8SIA1	Q92185	356 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SLC38A4	Q969I6	547 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	TM4SF19	Q96DZ7	209 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	THOC1	Q96FV9	657 aa	Known RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	FAM20A	Q96MK3	541 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	OMD	Q99983	421 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	CENPK	Q9BS16	269 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	TMEM175	Q9BSA9	504 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	TEKT3	Q9BXF9	490 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	GSDMC	Q9BYG8	508 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	POLR3F	Q9H1D9	316 aa	Predicted RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	BICC1	Q9H694	974 aa	Known RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440		Q9N2K0	584 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	FKBP14	Q9NWM8	211 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SYBU	Q9NX95	663 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SLC39A1	Q9NY26	324 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SPHK1	Q9NYA1	384 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SIRT4	Q9Y6E7	314 aa	Predicted RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	MAGI1	Q96QZ7	1491 aa	Predicted RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	ZMYM6	O95789	1325 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440		A0A096LPK6	155 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	PLSCR5	A0PG75	271 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	GOLGA8IP	A6NC78	632 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	UNC119B	A6NIH7	251 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440		F8VVB4	439 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440		F8VWA3	439 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SCAMP2	O15127	329 aa	Known RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	NBR2	O15453	112 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	SCO2	O43819	266 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	LDB3	O75112	727 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	CDC123	O75794	336 aa	Predicted RBP	3.88	□□□□□ -1.79
USP44-208	ENST00000552440	ESRRB	O95718	433 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	BAG3	O95817	575 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	PGK1	P00558	417 aa		3.88	□□□□□ -1.79
USP44-208	ENST00000552440	ERCC1	P07992	297 aa	Predicted RBP	3.88	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms