RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 FEN1P39748 380 aaKnown RBP19.85■□□□□ 0.77
VPS29-206ENST00000549578 XKP51811 444 aa19.85■□□□□ 0.77
VPS29-206ENST00000549578 OR4D2P58180 307 aa19.85■□□□□ 0.77
VPS29-206ENST00000549578 ATP1A4Q13733 1029 aa19.85■□□□□ 0.77
VPS29-206ENST00000549578 SERTAD2Q14140 314 aa19.85■□□□□ 0.77
VPS29-206ENST00000549578 SFT2D3Q587I9 215 aa19.85■□□□□ 0.77
VPS29-206ENST00000549578 CPEB2Q7Z5Q1 589 aaKnown RBP19.85■□□□□ 0.77
VPS29-206ENST00000549578 FAM9CQ8IZT9 166 aa19.85■□□□□ 0.77
VPS29-206ENST00000549578 SLC35C2Q9NQQ7 365 aa19.85■□□□□ 0.77
VPS29-206ENST00000549578 SDR39U1Q9NRG7 319 aaPredicted RBP19.85■□□□□ 0.77
VPS29-206ENST00000549578 PNO1Q9NRX1 252 aaKnown RBP19.85■□□□□ 0.77
VPS29-206ENST00000549578 SH3BP4Q9P0V3 963 aa19.85■□□□□ 0.77
VPS29-206ENST00000549578 C19orf25Q9UFG5 118 aaPredicted RBP19.85■□□□□ 0.77
VPS29-206ENST00000549578 ATP6V1HQ9UI12 483 aa19.85■□□□□ 0.77
VPS29-206ENST00000549578 ZNF780BQ9Y6R6 833 aa19.85■□□□□ 0.77
VPS29-206ENST00000549578 TPRP12270 2363 aaKnown RBP19.84■□□□□ 0.77
VPS29-206ENST00000549578 LOC102723996A0A087X1L8 192 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 C9JVG2 144 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 SNX3O60493 162 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 COX7A2P14406 83 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 NCF2P19878 526 aaPredicted RBP19.84■□□□□ 0.77
VPS29-206ENST00000549578 C21orf58P58505 322 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 DUSP2Q05923 314 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 CDC20Q12834 499 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 PDCD4Q53EL6 469 aaKnown RBP19.84■□□□□ 0.77
VPS29-206ENST00000549578 R3HCC1LQ7Z5L2 792 aaKnown RBP19.84■□□□□ 0.77
VPS29-206ENST00000549578 AMER2Q8N7J2 671 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 OR11G2Q8NGC1 345 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 PPWD1Q96BP3 646 aaKnown RBP19.84■□□□□ 0.77
VPS29-206ENST00000549578 ZNF681Q96N22 645 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 CPNE5Q9HCH3 593 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 P4HTMQ9NXG6 502 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 TAS2R7Q9NYW3 318 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 TRIM33Q9UPN9 1127 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 ENTPD4Q9Y227 616 aa19.84■□□□□ 0.77
VPS29-206ENST00000549578 COPG1Q9Y678 874 aaKnown RBP19.84■□□□□ 0.77
VPS29-206ENST00000549578 CPMP14384 443 aa19.83■□□□□ 0.77
VPS29-206ENST00000549578 PTGER1P34995 402 aa19.83■□□□□ 0.77
VPS29-206ENST00000549578 RPL3P39023 403 aaKnown RBP19.83■□□□□ 0.77
VPS29-206ENST00000549578 STX1BP61266 288 aa19.83■□□□□ 0.77
VPS29-206ENST00000549578 MPEG1Q2M385 716 aa19.83■□□□□ 0.77
VPS29-206ENST00000549578 MIER2Q8N344 545 aa19.83■□□□□ 0.77
VPS29-206ENST00000549578 ZSCAN1Q8NBB4 408 aa19.83■□□□□ 0.77
VPS29-206ENST00000549578 CIDECQ96AQ7 238 aaPredicted RBP19.83■□□□□ 0.77
VPS29-206ENST00000549578 NACC2Q96BF6 587 aa19.83■□□□□ 0.77
VPS29-206ENST00000549578 MTERF3Q96E29 417 aa19.83■□□□□ 0.77
VPS29-206ENST00000549578 DGAT2Q96PD7 388 aa19.83■□□□□ 0.77
VPS29-206ENST00000549578 WDR77Q9BQA1 342 aaPredicted RBP19.83■□□□□ 0.77
VPS29-206ENST00000549578 FBXL4Q9UKA2 621 aa19.83■□□□□ 0.77
VPS29-206ENST00000549578 IGHV1-45A0A0A0MS14 117 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 MASP2O00187 686 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 PCDH17O14917 1159 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 OR10H2O60403 315 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 TBX19O60806 448 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 SEC24DO94855 1032 aaPredicted RBP19.82■□□□□ 0.76
VPS29-206ENST00000549578 LAMP1P11279 417 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 COX6A1P12074 109 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 PORP16435 677 aaPredicted RBP19.82■□□□□ 0.76
VPS29-206ENST00000549578 CSNK2A2P19784 350 aaPredicted RBP19.82■□□□□ 0.76
VPS29-206ENST00000549578 IL12AP29459 219 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 STT3AP46977 705 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 PLIN5Q00G26 463 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 PCOLCEQ15113 449 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 CPTPQ5TA50 214 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 PAOXQ6QHF9 649 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 DGAT2L6Q6ZPD8 337 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 ST13P4Q8IZP2 240 aaPredicted RBP19.82■□□□□ 0.76
VPS29-206ENST00000549578 OR9I1Q8NGQ6 314 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 DOK4Q8TEW6 326 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 ZNF764Q96H86 408 aaPredicted RBP19.82■□□□□ 0.76
VPS29-206ENST00000549578 CCT8L2Q96SF2 557 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 ADAP2Q9NPF8 381 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 GIMAP4Q9NUV9 329 aa19.82■□□□□ 0.76
VPS29-206ENST00000549578 SRRM3A6NNA2 597 aaPredicted RBP19.81■□□□□ 0.76
VPS29-206ENST00000549578 PEX12O00623 359 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 SLC22A3O75751 556 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 SLC35E2P0CK97 266 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 EFNA1P20827 205 aaPredicted RBP19.81■□□□□ 0.76
VPS29-206ENST00000549578 GPX3P22352 226 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 CLNS1AP54105 237 aaKnown RBP19.81■□□□□ 0.76
VPS29-206ENST00000549578 PGS1Q32NB8 556 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 CRTC2Q53ET0 693 aaPredicted RBP19.81■□□□□ 0.76
VPS29-206ENST00000549578 METTL21CQ5VZV1 264 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 PAPD4Q6PIY7 484 aaKnown RBP19.81■□□□□ 0.76
VPS29-206ENST00000549578 CCDC116Q8IYX3 515 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 LRRC25Q8N386 305 aaPredicted RBP19.81■□□□□ 0.76
VPS29-206ENST00000549578 RBM18Q96H35 190 aaKnown RBP19.81■□□□□ 0.76
VPS29-206ENST00000549578 BBS4Q96RK4 519 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 ZNF700Q9H0M5 742 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 ZNF385DQ9H6B1 395 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 CLMPQ9H6B4 373 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 SLAMF7Q9NQ25 335 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 ZIM2Q9NZV7 527 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 ZMIZ1Q9ULJ6 1067 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 MAPRE3Q9UPY8 281 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 A0A1W2PQ72 361 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 PDPK1O15530 556 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 PCSK2P16519 638 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 TNNI3P19429 210 aa19.81■□□□□ 0.76
VPS29-206ENST00000549578 TMPRSS3P57727 454 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms