RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SEMA4BQ9NPR2 832 aaPredicted RBP7.83□□□□□ -1.16
USP28-215ENST00000545608 PNPLA3Q9NST1 481 aa7.83□□□□□ -1.16
USP28-215ENST00000545608 GRHL1Q9NZI5 618 aa7.83□□□□□ -1.16
USP28-215ENST00000545608 WHRNQ9P202 907 aa7.83□□□□□ -1.16
USP28-215ENST00000545608 TXNDC16Q9P2K2 825 aa7.83□□□□□ -1.16
USP28-215ENST00000545608 TNFRSF10DQ9UBN6 386 aa7.83□□□□□ -1.16
USP28-215ENST00000545608 RNF14Q9UBS8 474 aa7.83□□□□□ -1.16
USP28-215ENST00000545608 RNF112Q9ULX5 631 aa7.83□□□□□ -1.16
USP28-215ENST00000545608 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.83□□□□□ -1.16
USP28-215ENST00000545608 PDZD2O15018 2839 aa7.83□□□□□ -1.16
USP28-215ENST00000545608 CCDC168Q8NDH2 2452 aa7.83□□□□□ -1.16
USP28-215ENST00000545608 POLQO75417 2590 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 SYNDIG1LA6NDD5 238 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 WASHC1A8K0Z3 465 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 UBXN8O00124 270 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 ACOT7O00154 380 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 HRKO00198 91 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 RAD51CO43502 376 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 FGF17O60258 216 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 IGHG3P01860 377 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 S100BP04271 92 aaPredicted RBP7.82□□□□□ -1.16
USP28-215ENST00000545608 CELA3AP09093 270 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 SLC35E2BP0CK96 405 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 CCL3P10147 92 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 HIST1H1TP22492 207 aaPredicted RBP7.82□□□□□ -1.16
USP28-215ENST00000545608 CPN2P22792 545 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 CHRNB4P30926 498 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 SPRP35270 261 aaPredicted RBP7.82□□□□□ -1.16
USP28-215ENST00000545608 PIGAP37287 484 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 MAGEA5P43359 124 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 STT3AP46977 705 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 IGLV3-21P80748 117 aaPredicted RBP7.82□□□□□ -1.16
USP28-215ENST00000545608 PCDH1Q08174 1060 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 ASPHQ12797 758 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 CALCOCO2Q13137 446 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 SLAMF1Q13291 335 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 TRADDQ15628 312 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 AP5B1Q2VPB7 878 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 KBTBD12Q3ZCT8 623 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 TMEM35AQ53FP2 167 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 PIGGQ5H8A4 983 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 DEPDC1Q5TB30 811 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 GRTP1Q5TC63 336 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 NDUFAF5Q5TEU4 345 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 MED27Q6P2C8 311 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 ZNF585AQ6P3V2 769 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 RGS9BPQ6ZS82 235 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 GK5Q6ZS86 529 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 FAM47EQ6ZV65 393 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 CHSY3Q70JA7 882 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 TRILQ7L0X0 811 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 LRRC70Q7Z2Q7 622 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 CDH24Q86UP0 819 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 SLC22A16Q86VW1 577 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 CTAGE3PQ8IX95 158 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 LAS2Q8IYD9 372 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 PPM1NQ8N819 430 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 GOLM1Q8NBJ4 401 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 OR7G3Q8NG95 312 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 OR5L2Q8NGL0 311 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 STAG3L4Q8TBR4 150 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 NXNL1Q96CM4 212 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 SENP5Q96HI0 755 aaPredicted RBP7.82□□□□□ -1.16
USP28-215ENST00000545608 SGCZQ96LD1 299 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 SMC6Q96SB8 1091 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 ATOH8Q96SQ7 321 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 FAM173AQ9BQD7 235 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 IL1RL2Q9HB29 575 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 KCNJ16Q9NPI9 418 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 SACM1LQ9NTJ5 587 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 TUBA8Q9NY65 449 aaPredicted RBP7.82□□□□□ -1.16
USP28-215ENST00000545608 PYCARDQ9ULZ3 195 aa7.82□□□□□ -1.16
USP28-215ENST00000545608 ZNF407Q9C0G0 2248 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 A0A1B0GVC2 190 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 ATP6AP2A0A1C7CYW4 349 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 LRRC14BA6NHZ5 514 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 SUPT3HB4E1H0 165 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 K7EPI3 171 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 KERAO60938 352 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 SUPT3HO75486 399 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 PRKRAO75569 313 aaKnown RBP7.81□□□□□ -1.16
USP28-215ENST00000545608 ATP6AP2O75787 350 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 SASH3O75995 380 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 NADKO95544 446 aaPredicted RBP7.81□□□□□ -1.16
USP28-215ENST00000545608 IGKV3-11P04433 115 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 P04436 131 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 GSTA2P09210 222 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 GLI4P10075 376 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 MTHFD2P13995 350 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 ACVR2AP27037 513 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 SSR2P43308 183 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 HNRNPH2P55795 449 aaKnown RBP7.81□□□□□ -1.16
USP28-215ENST00000545608 FOLH1Q04609 750 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 GABPB1Q06547 395 aaPredicted RBP7.81□□□□□ -1.16
USP28-215ENST00000545608 C2orf54Q08AI8 447 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 DDX39BQ13838 428 aaKnown RBP7.81□□□□□ -1.16
USP28-215ENST00000545608 SLC10A1Q14973 349 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 MPEG1Q2M385 716 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 HYAL4Q2M3T9 481 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 ZNF791Q3KP31 576 aaPredicted RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms