RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 LILRB3O75022 631 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 ARAFP10398 606 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 GPC1P35052 558 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 BMPR1AP36894 532 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 CASP3P42574 277 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 XKP51811 444 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 WDR5P61964 334 aaKnown RBP14.28□□□□□ -0.12
USP28-214ENST00000545540 RACK1P63244 317 aaKnown RBP14.28□□□□□ -0.12
USP28-214ENST00000545540 TTC23LQ6PF05 361 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 GLCCI1Q86VQ1 547 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 NLGN4YQ8NFZ3 816 aaPredicted RBP14.28□□□□□ -0.12
USP28-214ENST00000545540 STARD8Q92502 1023 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 ARRDC3Q96B67 414 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 GPBP1L1Q9HC44 474 aaPredicted RBP14.28□□□□□ -0.12
USP28-214ENST00000545540 TBC1D14Q9P2M4 693 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 NTNG1Q9Y2I2 539 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 LCMT2O60294 686 aaKnown RBP14.28□□□□□ -0.12
USP28-214ENST00000545540 CDRT1O95170 752 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 PCCBP05166 539 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 ITGA2P17301 1181 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 SDHBP21912 280 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 GPR19Q15760 415 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 LRRC26Q2I0M4 334 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 DEFB115Q30KQ5 88 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 FNDC3BQ53EP0 1204 aaKnown RBP14.28□□□□□ -0.12
USP28-214ENST00000545540 DCST1Q5T197 706 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 CPA6Q8N4T0 437 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 ZDHHC5Q9C0B5 715 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 SERHL2Q9H4I8 314 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 FKBP14Q9NWM8 211 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 ZNF232Q9UNY5 417 aa14.28□□□□□ -0.12
USP28-214ENST00000545540 ZAR1LA6NP61 321 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 HYAL3O43820 417 aaPredicted RBP14.27□□□□□ -0.12
USP28-214ENST00000545540 CYP17A1P05093 508 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 LAG3P18627 525 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 SOX6P35712 828 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 BUD31P41223 144 aaPredicted RBP14.27□□□□□ -0.12
USP28-214ENST00000545540 SLC15A1P46059 708 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 DGKGP49619 791 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 ACSM5Q6NUN0 579 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 PNCKQ6P2M8 343 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 SLC9B2Q86UD5 537 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 TRIM48Q8IWZ4 208 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 GATAD2BQ8WXI9 593 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 TFGQ92734 400 aaPredicted RBP14.27□□□□□ -0.12
USP28-214ENST00000545540 TSSK6Q9BXA6 273 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 UCK2Q9BZX2 261 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 ZBP1Q9H171 429 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 EGLN3Q9H6Z9 239 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 PLCXD1Q9NUJ7 323 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 OR1A2Q9Y585 309 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 HEATR5BQ9P2D3 2071 aa14.27□□□□□ -0.12
USP28-214ENST00000545540 SDK1Q7Z5N4 2213 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 RHCEP18577 417 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 ELAVL4P26378 380 aaKnown RBP14.27□□□□□ -0.13
USP28-214ENST00000545540 FCHO2Q0JRZ9 810 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 SPHARQ15513 63 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 CNKSR3Q6P9H4 555 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 LILRA6Q6PI73 481 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 CASP12Q6UXS9 341 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 BCL7BQ9BQE9 202 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 SLC30A2Q9BRI3 323 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 PDZK1P1A8MUH7 402 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 HEPACAM2A8MVW5 462 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 H3BQ06 376 aaPredicted RBP14.27□□□□□ -0.13
USP28-214ENST00000545540 HSD3B1P14060 373 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 HSD3B2P26439 372 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 UGT2B10P36537 528 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 PCBP3P57721 371 aaKnown RBP14.27□□□□□ -0.13
USP28-214ENST00000545540 OR2B6P58173 313 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 IFITM2Q01629 132 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 ZNF630Q2M218 657 aaPredicted RBP14.27□□□□□ -0.13
USP28-214ENST00000545540 IQCHQ86VS3 1027 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 RASGRP3Q8IV61 690 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 NUS1Q96E22 293 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 DTD2Q96FN9 168 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 TREX2Q9BQ50 279 aaPredicted RBP14.27□□□□□ -0.13
USP28-214ENST00000545540 TTYH2Q9BSA4 534 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 EFCAB11Q9BUY7 163 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 REV1Q9UBZ9 1251 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 TBC1D24Q9ULP9 559 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 WDR37Q9Y2I8 494 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 KCNE3Q9Y6H6 103 aa14.27□□□□□ -0.13
USP28-214ENST00000545540 E9PQ18 207 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 HMGN4O00479 90 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 NR2F1P10589 423 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 ZNF91Q05481 1191 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 DHCR24Q15392 516 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 ZNF181Q2M3W8 571 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 CRB2Q5IJ48 1285 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 ATAT1Q5SQI0 421 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 ZNF770Q6IQ21 691 aaPredicted RBP14.26□□□□□ -0.13
USP28-214ENST00000545540 USP30Q70CQ3 517 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 DPPA4Q7L190 304 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 CAMKMTQ7Z624 323 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 SHISA5Q8N114 240 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 FAM46DQ8NEK8 389 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 TM4SF18Q96CE8 201 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 TIFAQ96CG3 184 aa14.26□□□□□ -0.13
USP28-214ENST00000545540 NEK6Q9HC98 313 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms