RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SCN8AQ9UQD0 1980 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 A0A096LPI6 279 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 OR6C65A6NJZ3 312 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PER2O15055 1255 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 SMAD6O43541 496 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 GATCO43716 136 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 PCDHGA12O60330 932 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ITGA10O75578 1167 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 WDR47O94967 919 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 IFNA14P01570 189 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 APEHP13798 732 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 GRK5P34947 590 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 STARD6P59095 220 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ENPP2Q13822 863 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 LASP1Q14847 261 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 LARS2Q15031 903 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 FUT11Q495W5 492 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ZMAT1Q5H9K5 638 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 TMEM201Q5SNT2 666 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PDZK1Q5T2W1 519 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 DDI2Q5TDH0 399 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MANEALQ5VSG8 457 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ELP2Q6IA86 826 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PTCRAQ6ISU1 281 aaPredicted RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 ARHGAP36Q6ZRI8 547 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 OR8H3Q8N146 312 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 CLRN3Q8NCR9 226 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 OR4A15Q8NGL6 344 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 OR6B3Q8NGW1 331 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 CREB3L4Q8TEY5 395 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 SLC13A3Q8WWT9 602 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ADAMTS14Q8WXS8 1223 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 SMARCD2Q92925 531 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PMEPA1Q969W9 287 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MARC2Q969Z3 335 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 COQ8BQ96D53 544 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 NXPE2Q96DL1 559 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 RSPRY1Q96DX4 576 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 EXOC2Q96KP1 924 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PPP3R2Q96LZ3 170 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 TMEM74Q96NL1 305 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 UBL7Q96S82 380 aaPredicted RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 USB1Q9BQ65 265 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 RIBC2Q9H4K1 309 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ABCB8Q9NUT2 735 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 C14orf119Q9NWQ9 140 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 NDUFB11Q9NX14 153 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 COPZ2Q9P299 210 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 NDOR1Q9UHB4 597 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 POFUT2Q9Y2G5 429 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 IGLV3-10A0A075B6K4 115 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 NEMP2A6NFY4 417 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 C2CD4DB7Z1M9 353 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 CASC3O15234 703 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 GMDSO60547 372 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 LRG1P02750 347 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PEPDP12955 493 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ANXA8P13928 327 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MTHFD2P13995 350 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 GALP22466 123 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 AVPR1AP37288 418 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 GPR15P49685 360 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ATP12AP54707 1039 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 UFM1P61960 85 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 RPP38P78345 283 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 ZXDBP98169 803 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MLLT11Q13015 90 aaPredicted RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 CAMK2GQ13555 558 aaPredicted RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 GTDC1Q4AE62 458 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 RAB6CQ53S08 254 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 C6orf136Q5SQH8 315 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ATAT1Q5SQI0 421 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MPP7Q5T2T1 576 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 CCDC71Q8IV32 467 aaPredicted RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 ZDHHC21Q8IVQ6 265 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 CMTM8Q8IZV2 173 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 STPG2Q8N412 459 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 OR56A4Q8NGH8 313 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 STAG3L4Q8TBR4 150 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 METTL21AQ8WXB1 218 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 FGF13Q92913 245 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 UCN3Q969E3 161 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 SGK3Q96BR1 496 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ULK4Q96C45 1275 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ARL5BQ96KC2 179 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 QRFPRQ96P65 431 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 CPPED1Q9BRF8 314 aaPredicted RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 ASPNQ9BXN1 380 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MAGEB5Q9BZ81 275 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 RAB6CQ9H0N0 254 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 KCNH6Q9H252 994 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 OR51E2Q9H255 320 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 GHITMQ9H3K2 345 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PDE7BQ9NP56 450 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 SEMA3GQ9NS98 782 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MCUBQ9NWR8 336 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 CLDND1Q9NY35 253 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 TRPM5Q9NZQ8 1165 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 NDRG3Q9UGV2 375 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 LSM2Q9Y333 95 aaKnown RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms