RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ZAR1LA6NP61 321 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 CLCA1A8K7I4 914 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 SYT5O00445 386 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 MAN2B1O00754 1011 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 TMPRSS11DO60235 418 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 PCDHGA12O60330 932 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 PRAMEF10O60809 474 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 MT-ND2P03891 347 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 GBAP04062 536 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 CDK1P06493 297 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 FMO3P31513 532 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 SSR2P43308 183 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 CCT3P49368 545 aaKnown RBP9.35□□□□□ -0.91
SS18-205ENST00000542420 ADPRHP54922 357 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 CDH12P55289 794 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 RPS15AP62244 130 aaKnown RBP9.35□□□□□ -0.91
SS18-205ENST00000542420 COX10Q12887 443 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 RPE65Q16518 533 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 DGUOKQ16854 277 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 RNLSQ5VYX0 342 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 ABHD17CQ6PCB6 329 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 SLC44A2Q8IWA5 706 aaPredicted RBP9.35□□□□□ -0.91
SS18-205ENST00000542420 HORMAD2Q8N7B1 307 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 OR52E1Q8NGJ3 308 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 TMEM19Q96HH6 336 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 AMDHD1Q96NU7 426 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 COL21A1Q96P44 957 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 DCUN1D5Q9BTE7 237 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 ITPAQ9BY32 194 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 NAA50Q9GZZ1 169 aaKnown RBP9.35□□□□□ -0.91
SS18-205ENST00000542420 ARMC7Q9H6L4 198 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 SLAMF7Q9NQ25 335 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 ACSL6Q9UKU0 697 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 TMCC3Q9ULS5 477 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 NCKAP1Q9Y2A7 1128 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 PRKAB1Q9Y478 270 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 KLK4Q9Y5K2 254 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 PDE4DIPQ5VU43 2346 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 IGKV1-8A0A0C4DH67 115 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 A0A0G2JPF8 293 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.34□□□□□ -0.91
SS18-205ENST00000542420 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.34□□□□□ -0.91
SS18-205ENST00000542420 FAM221BA6H8Z2 402 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 PRAMEF25A6NGN4 478 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 GRXCR1A8MXD5 290 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 HNRNPCL2B2RXH8 293 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 HNRNPCL3B7ZW38 293 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 PTGES3LE9PB15 166 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 HMGN4O00479 90 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 STK25O00506 426 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 XPNPEP2O43895 674 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 RECKO95980 971 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 HNRNPCL4P0DMR1 293 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 HIST1H1TP22492 207 aaPredicted RBP9.34□□□□□ -0.91
SS18-205ENST00000542420 AQP1P29972 269 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 TMED10P49755 219 aaKnown RBP9.34□□□□□ -0.91
SS18-205ENST00000542420 LBX1P52954 281 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 ARPC4P59998 168 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 SNRPGP62308 76 aaKnown RBP9.34□□□□□ -0.91
SS18-205ENST00000542420 OCA2Q04671 838 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 ILKQ13418 452 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 KRT33BQ14525 404 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 ZNF846Q147U1 533 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 INAQ16352 499 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 SPDYE7PQ495Y7 208 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 TMEM201Q5SNT2 666 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 IER5LQ5T953 404 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 OR2L3Q8NG85 312 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 SLC38A4Q969I6 547 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 GAL3ST3Q96A11 431 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 MS4A6EQ96DS6 147 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 Q96MT0 163 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 ALPK1Q96QP1 1244 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 CSF3RQ99062 836 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 DPH7Q9BTV6 452 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 ACAT2Q9BWD1 397 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 CCDC90BQ9GZT6 254 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 S1PR5Q9H228 398 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 ANKRD19PQ9H560 264 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 LTB4R2Q9NPC1 389 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 FBXO8Q9NRD0 319 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 TM7SF3Q9NS93 570 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 GIMAP4Q9NUV9 329 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 NTMQ9P121 344 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 FTSJ1Q9UET6 329 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 SERGEFQ9UGK8 458 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 RAB23Q9ULC3 237 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 LIPT1Q9Y234 373 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 ASB4Q9Y574 426 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 INMTO95050 263 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 AGR2O95994 175 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 PAK4O96013 591 aaPredicted RBP9.34□□□□□ -0.91
SS18-205ENST00000542420 CYP4B1P13584 511 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 DRD1P21728 446 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 MASP1P48740 699 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 CRISP3P54108 245 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 YPEL5P62699 121 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 IL1RL1Q01638 556 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 HYAL1Q12794 435 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 HYAL2Q12891 473 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms