RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 LRRK1Q38SD2 2015 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 TRBC2A0A5B9 178 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 RTCAO00442 366 aaKnown RBP11.9□□□□□ -0.51
RNF4-222ENST00000541204 LINC01565O15544 149 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 PAK4O96013 591 aaPredicted RBP11.9□□□□□ -0.51
RNF4-222ENST00000541204 FURINP09958 794 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 FEN1P39748 380 aaKnown RBP11.9□□□□□ -0.51
RNF4-222ENST00000541204 SOX3P41225 446 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 TAS2R50P59544 299 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 RBBP4Q09028 425 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 KRR1Q13601 381 aaKnown RBP11.9□□□□□ -0.51
RNF4-222ENST00000541204 DUSP7Q16829 419 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 PIP5KL1Q5T9C9 394 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 PLAG1Q6DJT9 500 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 HIST2H2AA3Q6FI13 130 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 TRIM40Q6P9F5 258 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 C19orf48Q6RUI8 117 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 CCDC80Q76M96 950 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 OR8H2Q8N162 312 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 CACTIN-AS1Q8N1I8 211 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 OXR1Q8N573 874 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 GANCQ8TET4 914 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 TFGQ92734 400 aaPredicted RBP11.9□□□□□ -0.51
RNF4-222ENST00000541204 SLC30A2Q9BRI3 323 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 EPHX3Q9H6B9 360 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 TMEM38AQ9H6F2 299 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 SFXN1Q9H9B4 322 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 C11orf16Q9NQ32 467 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 DMRT3Q9NQL9 472 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 CLN6Q9NWW5 311 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 FTSJ1Q9UET6 329 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 MOSPD1Q9UJG1 213 aa11.9□□□□□ -0.51
RNF4-222ENST00000541204 CCDC88CQ9P219 2028 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 A0A1W2PP55 124 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 ZAR1LA6NP61 321 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 A8MVJ9 347 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 RGS5O15539 181 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 GPR37L1O60883 481 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 STATHP02808 62 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 CKMT1AP12532 417 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 ACADLP28330 430 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 TNFSF8P32971 234 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 DRD3P35462 400 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 SLC15A1P46059 708 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 VASPP50552 380 aaPredicted RBP11.89□□□□□ -0.51
RNF4-222ENST00000541204 CRISP1P54107 249 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 LRRC74AQ0VAA2 488 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 COL9A2Q14055 689 aaPredicted RBP11.89□□□□□ -0.51
RNF4-222ENST00000541204 WSCD2Q2TBF2 565 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 TIMM50Q3ZCQ8 353 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 CRB2Q5IJ48 1285 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 FRMPD2BQ6IN97 320 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 NXPE4Q6UWF7 544 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 UBE2Q1Q7Z7E8 422 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 YAF2Q8IY57 180 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 TAGAPQ8N103 731 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 VANGL1Q8TAA9 524 aaPredicted RBP11.89□□□□□ -0.51
RNF4-222ENST00000541204 CXorf40BQ96DE9 158 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 SGPP1Q9BX95 441 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 SLC6A17Q9H1V8 727 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 OR52A5Q9H2C5 316 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 FEZF1A0PJY2 475 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 PDZK1P1A8MUH7 402 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 H3BQ06 376 aaPredicted RBP11.89□□□□□ -0.51
RNF4-222ENST00000541204 ENTPD6O75354 484 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 SNX4O95219 450 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 RECKO95980 971 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 RPS19P39019 145 aaKnown RBP11.89□□□□□ -0.51
RNF4-222ENST00000541204 HMGA2P52926 109 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 CDK3Q00526 305 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 DPTQ07507 201 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 SHHQ15465 462 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 DUSP6Q16828 381 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 PRAMEF14Q5SWL7 426 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 AGAP6Q5VW22 663 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 PRAMEF13Q5VWM6 474 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 C16orf78Q8WTQ4 265 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 PIK3R3Q92569 461 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 AGAP4Q96P64 663 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 OPALINQ96PE5 141 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 TRNT1Q96Q11 434 aaKnown RBP11.89□□□□□ -0.51
RNF4-222ENST00000541204 MAPKAP1Q9BPZ7 522 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 EFCAB11Q9BUY7 163 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 TAPBPLQ9BX59 468 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 PBX4Q9BYU1 374 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 CUEDC1Q9NWM3 386 aaPredicted RBP11.89□□□□□ -0.51
RNF4-222ENST00000541204 TAS2R9Q9NYW1 312 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 CNOT2Q9NZN8 540 aaKnown RBP11.89□□□□□ -0.51
RNF4-222ENST00000541204 TBC1D24Q9ULP9 559 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 ENPP4Q9Y6X5 453 aa11.89□□□□□ -0.51
RNF4-222ENST00000541204 SH3D21A4FU49 640 aa11.88□□□□□ -0.51
RNF4-222ENST00000541204 KLHL18O94889 574 aa11.88□□□□□ -0.51
RNF4-222ENST00000541204 SOX14O95416 240 aa11.88□□□□□ -0.51
RNF4-222ENST00000541204 IGFBP1P08833 259 aaPredicted RBP11.88□□□□□ -0.51
RNF4-222ENST00000541204 GDI1P31150 447 aa11.88□□□□□ -0.51
RNF4-222ENST00000541204 TIE1P35590 1138 aa11.88□□□□□ -0.51
RNF4-222ENST00000541204 PCBP3P57721 371 aaKnown RBP11.88□□□□□ -0.51
RNF4-222ENST00000541204 OR2B6P58173 313 aa11.88□□□□□ -0.51
RNF4-222ENST00000541204 TAS2R38P59533 333 aa11.88□□□□□ -0.51
RNF4-222ENST00000541204 ELOAQ14241 798 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms