RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TRIM16LQ309B1 348 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 Q6ZNX1 250 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 YAF2Q8IY57 180 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 OR5K2Q8NHB8 316 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 TSACCQ96A04 125 aaPredicted RBP16.04■□□□□ 0.16
USP28-208ENST00000540438 AIF1LQ9BQI0 150 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 DCSTAMPQ9H295 470 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 MYNNQ9NPC7 610 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 YBX2Q9Y2T7 364 aaKnown RBP16.04■□□□□ 0.16
USP28-208ENST00000540438 ATG4BQ9Y4P1 393 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 ISM1B1AKI9 464 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 C1QTNF3-AMACRE9PGA6 284 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 ADAMDEC1O15204 470 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 CH25HO95992 272 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 GABARAPL2P60520 117 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 MXD1Q05195 221 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 TARDBPQ13148 414 aaKnown RBP eCLIP16.04■□□□□ 0.167e-8■■□□□ 14.2
USP28-208ENST00000540438 KEAP1Q14145 624 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 TEAD4Q15561 434 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 CLEC12AQ5QGZ9 265 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 B3GLCTQ6Y288 498 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 GALNT13Q8IUC8 556 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 CPA6Q8N4T0 437 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 TP53I13Q8NBR0 393 aaPredicted RBP16.04■□□□□ 0.16
USP28-208ENST00000540438 OTULINQ96BN8 352 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 OR51I1Q9H343 314 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 SEMA3GQ9NS98 782 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 SLC27A6Q9Y2P4 619 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 FOXE1O00358 373 aaPredicted RBP16.03■□□□□ 0.16
USP28-208ENST00000540438 HMGN4O00479 90 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 HAT1O14929 419 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 CCNB2O95067 398 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 HNRNPA1P09651 372 aaKnown RBP eCLIP16.03■□□□□ 0.16
USP28-208ENST00000540438 RXRGP48443 463 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 CCR8P51685 355 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 PROX2Q3B8N5 592 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 TMIEQ8NEW7 156 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 PATE1Q8WXA2 126 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 PIP5K1AQ99755 562 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 MS4A8Q9BY19 250 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 MARCH7Q9H992 704 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 TMEM9Q9P0T7 183 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 PADI2Q9Y2J8 665 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 CELSR3Q9NYQ7 3312 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 KIF26AQ9ULI4 1882 aaPredicted RBP16.03■□□□□ 0.16
USP28-208ENST00000540438 A8MU76 341 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 ENTPD6O75354 484 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 GGT2P36268 569 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 TGFBR2P37173 567 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 BCL6P41182 706 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 CSNK1G2P78368 415 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 EEF1A2Q05639 463 aaKnown RBP16.03■□□□□ 0.16
USP28-208ENST00000540438 TUBA3CQ13748 450 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 ARMCX4Q5H9R4 360 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 METRNLQ641Q3 311 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 REEP3Q6NUK4 255 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 OXR1Q8N573 874 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 ZNF675Q8TD23 568 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 YIPF6Q96EC8 236 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 BBS4Q96RK4 519 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 GLIPR2Q9H4G4 154 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 TMEM74BQ9NUR3 256 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 TVP23BQ9NYZ1 205 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 TBX1O43435 398 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 EIF2S1P05198 315 aaKnown RBP16.03■□□□□ 0.16
USP28-208ENST00000540438 DDCP20711 480 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 SLAMF1Q13291 335 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 SGCGQ13326 291 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 ZC3H12BQ5HYM0 836 aaKnown RBP16.03■□□□□ 0.16
USP28-208ENST00000540438 MSANTD1Q6ZTZ1 278 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 GPR65Q8IYL9 337 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 TCEANCQ8N8B7 351 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 OR10G6Q8NH81 332 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 MCFD2Q8NI22 146 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 WDR36Q8NI36 951 aaKnown RBP16.03■□□□□ 0.16
USP28-208ENST00000540438 WFIKKN2Q8TEU8 576 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 MYADMQ96S97 322 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 EPYCQ99645 322 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 TREX2Q9BQ50 279 aaPredicted RBP16.03■□□□□ 0.16
USP28-208ENST00000540438 ANGPT4Q9Y264 503 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 CARD8Q9Y2G2 431 aa16.03■□□□□ 0.16
USP28-208ENST00000540438 OR2A25A4D2G3 310 aa16.02■□□□□ 0.16
USP28-208ENST00000540438 CLDN25C9JDP6 229 aa16.02■□□□□ 0.16
USP28-208ENST00000540438 PPP2CBP62714 309 aa16.02■□□□□ 0.16
USP28-208ENST00000540438 PPP2CAP67775 309 aa16.02■□□□□ 0.16
USP28-208ENST00000540438 TSTQ16762 297 aaKnown RBP16.02■□□□□ 0.16
USP28-208ENST00000540438 RGS21Q2M5E4 152 aa16.02■□□□□ 0.16
USP28-208ENST00000540438 GPAT3Q53EU6 434 aa16.02■□□□□ 0.16
USP28-208ENST00000540438 TCTN3Q6NUS6 607 aa16.02■□□□□ 0.16
USP28-208ENST00000540438 DNAJC22Q8N4W6 341 aa16.02■□□□□ 0.16
USP28-208ENST00000540438 GABARAPL1Q9H0R8 117 aa16.02■□□□□ 0.16
USP28-208ENST00000540438 SIRT3Q9NTG7 399 aaPredicted RBP16.02■□□□□ 0.16
USP28-208ENST00000540438 QPCTLQ9NXS2 382 aa16.02■□□□□ 0.16
USP28-208ENST00000540438 BTN3A3O00478 584 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 GABARAPO95166 117 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 FGF19O95750 216 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 ARAFP10398 606 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 XCR1P46094 333 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 PDE7AQ13946 482 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 TPRG1LQ5T0D9 272 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms