RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 KRT77Q7Z794 578 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 ELP4Q96EB1 424 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 TCEAL4Q96EI5 215 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 TRMT2BQ96GJ1 504 aaKnown RBP10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 NLNQ9BYT8 704 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 MIXL1Q9H2W2 232 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 RAD18Q9NS91 495 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 NUBP2Q9Y5Y2 271 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 UROSP10746 265 aa10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 MYOGP15173 224 aa10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 RFC3P40938 356 aa10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 ALKBH2Q6NS38 261 aa10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 SSX9Q7RTT3 188 aa10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 ASPGQ86U10 573 aa10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 ATCAYQ86WG3 371 aa10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 C2CD4AQ8NCU7 369 aaPredicted RBP10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 KCNJ9Q92806 393 aa10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 TSR3Q9UJK0 312 aaKnown RBP10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 PCDHB8Q9UN66 801 aa10.4□□□□□ -0.75
CLSTN3-207ENST00000537408 ZDHHC11BP0C7U3 371 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 CTSAP10619 480 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 ACSL1P33121 698 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 FOXA1P55317 472 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 ZNF648Q5T619 568 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 FAM217AQ8IXS0 508 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 IPMKQ8NFU5 416 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 MRPL45Q9BRJ2 306 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 ZYG11BQ9C0D3 744 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 VNN3Q9NY84 501 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 FOCADQ5VW36 1801 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 IGKV6-21A0A0C4DH24 114 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 TEX13CA0A0J9YWL9 993 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 DISC1C4P0D8 188 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 ADAMDEC1O15204 470 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 CCL16O15467 120 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 GPR143P51810 404 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 NR0B1P51843 470 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 GRIN2CQ14957 1233 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 RNF212Q495C1 297 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 HECTD2Q5U5R9 776 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 ATG9BQ674R7 924 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 C3orf33Q6P1S2 294 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 IL17RCQ8NAC3 791 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 OR11H7Q8NGC8 314 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 OR2T11Q8NH01 316 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 PABPC5Q96DU9 382 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 TSNAXQ99598 290 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 SDC3O75056 442 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 LPLP06858 475 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 HBQ1P09105 142 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 HAPLN1P10915 354 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 PRG2P13727 222 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 TYMPP19971 482 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 HOXA9P31269 272 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 SMSP52788 366 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 EFEMP1Q12805 493 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 UGT8Q16880 541 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 ZSWIM7Q19AV6 140 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 KIAA0907Q7Z7F0 614 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 DEFB106AQ8N104 65 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 STPG2Q8N412 459 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 FBXO39Q8N4B4 442 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 B3GNT7Q8NFL0 401 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 EXOSC8Q96B26 276 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 GABARAPL3Q9BY60 117 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 PRKD2Q9BZL6 878 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 ULBP1Q9BZM6 244 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 SLC9A8Q9Y2E8 581 aa10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 AAR2Q9Y312 384 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-207ENST00000537408 A0A1B0GTQ1 180 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 PMS2P1A4D2B8 440 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 TOXO94900 526 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 HNRNPA1P09651 372 aaKnown RBP eCLIP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 EPHA2P29317 976 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 CD79BP40259 229 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 LIMK1P53667 647 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ZNF235Q14590 738 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 VASNQ6EMK4 673 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 FAM109BQ6ICB4 259 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 TRNP1Q6NT89 227 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 FGD2Q7Z6J4 655 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ZDHHC17Q8IUH5 632 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 UXS1Q8NBZ7 420 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 AUTS2Q8WXX7 1259 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 KAT2AQ92830 837 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ELMOD3Q96FG2 381 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ART5Q96L15 291 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 POLR2J2Q9GZM3 115 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 RERGLQ9H628 205 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 EPHA6Q9UF33 1036 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 MEIKINA0A087WXM9 373 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 C7orf66A4D0T2 115 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 MLYCDO95822 493 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 CLCN7P51798 805 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 NR6A1Q15406 480 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 C19orf48Q6RUI8 117 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SCIMPQ6UWF3 145 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 EIF4E3Q8N5X7 224 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ZDHHC1Q8WTX9 485 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 TBL1YQ9BQ87 522 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms