RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	PPCS	Q9HAB8	311 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	TMBIM4	Q9HC24	238 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	CNIH4	Q9P003	139 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	FBXO5	Q9UKT4	447 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	MBD3L4	A6NDZ8	208 aa	Predicted RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	MBD3L3	A6NE82	208 aa	Predicted RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	GOLGA6L10	A6NI86	522 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	MBD3L5	A6NJ08	208 aa	Predicted RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	LRRC3C	A6NJW4	275 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	CD8B2	A6NJW9	211 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	EEF1E1-BLOC1S5	C9J1V9	151 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	INAFM1	C9JVW0	142 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	EEF1E1	O43324	174 aa	Known RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	CTNS	O60931	367 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	SAT1	P21673	171 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	CTSS	P25774	331 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	PIGA	P37287	484 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	MAGEA4	P43358	317 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	HNRNPF	P52597	415 aa	Known RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	CBX1	P83916	185 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	GABPB1	Q06547	395 aa	Predicted RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	CRYZ	Q08257	329 aa	Known RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZNF844	Q08AG5	666 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	SLC29A2	Q14542	456 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	RBBP5	Q15291	538 aa	Known RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZNF791	Q3KP31	576 aa	Predicted RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	TBCEL	Q5QJ74	424 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	ADGRD1	Q6QNK2	874 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	NXPE4	Q6UWF7	544 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	TMEM52	Q8NDY8	209 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	KIAA1191	Q96A73	305 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	PGM2	Q96G03	612 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079		Q96MF0	132 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	TSNARE1	Q96NA8	513 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	SERINC2	Q96SA4	455 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	OR8D2	Q9GZM6	311 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	SLC6A15	Q9H2J7	730 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	XAB2	Q9HCS7	855 aa	Known RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	SEMA4B	Q9NPR2	832 aa	Predicted RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	C20orf96	Q9NUD7	363 aa	Predicted RBP	11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	KCNE2	Q9Y6J6	123 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	AKAP6	Q13023	2319 aa		11.43	□□□□□ -0.58
CAPN1-223	ENST00000533079	C15orf38-AP3S2	A0A0A6YYH1	394 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	SH3D21	A4FU49	640 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	SDR42E2	A6NKP2	422 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	C17orf105	B2RV13	164 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	ERI3	O43414	337 aa	Known RBP	11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	ERN1	O75460	977 aa	Known RBP	11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	HAUS5	O94927	633 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	RFPL3S	P0C7P2	107 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	COX7A2	P14406	83 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	VPS41	P49754	854 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	ARL4C	P56559	192 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	IL2	P60568	153 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	STX4	Q12846	297 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	RUNX2	Q13950	521 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	RASA2	Q15283	850 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	PIGG	Q5H8A4	983 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	CEP85L	Q5SZL2	805 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	TRIM40	Q6P9F5	258 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	PAQR3	Q6TCH7	311 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	KLHDC8A	Q8IYD2	350 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	PDIK1L	Q8N165	341 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	CIART	Q8N365	385 aa	Predicted RBP	11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	LINC01560	Q8TB33	94 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	LRRC39	Q96DD0	335 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	MS4A6E	Q96DS6	147 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	SPACA9	Q96E40	222 aa	Predicted RBP	11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	ATP6V1G3	Q96LB4	118 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZNF597	Q96LX8	424 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZFP3	Q96NJ6	502 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	PITHD1	Q9GZP4	211 aa	Predicted RBP	11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	AICDA	Q9GZX7	198 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	CDC42EP4	Q9H3Q1	356 aa	Known RBP	11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	PSD3	Q9NYI0	1048 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	FETUB	Q9UGM5	382 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	DAPP1	Q9UN19	280 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	EIF3L	Q9Y262	564 aa	Known RBP	11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	IKBKG	Q9Y6K9	419 aa		11.42	□□□□□ -0.58
CAPN1-223	ENST00000533079	DNAJC13	O75165	2243 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079		A0A1W2PPR1	153 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	TCRBV7S3A2	A0A539	114 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	LRIT2	A6NDA9	550 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	CYR61	O00622	381 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	DYRK3	O43781	588 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZNF354A	O60765	605 aa	Predicted RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	F7	P08709	466 aa	Predicted RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	FPR1	P21462	350 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	GDF1	P27539	372 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	HNRNPH1	P31943	449 aa	Known RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	MTTP	P55157	894 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	LIM2	P55344	173 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	TIAL1	Q01085	375 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	IFFO1	Q0D2I5	559 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	DUSP8	Q13202	625 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	ADPRM	Q3LIE5	342 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	TNFAIP8L3	Q5GJ75	292 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms