RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SYNDIG1Q9H7V2 258 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 ANKHQ9HCJ1 492 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 LYRM4Q9HD34 91 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 LHX9Q9NQ69 397 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 AIG1Q9NVV5 245 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 OCIAD1Q9NX40 245 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 LYARQ9NX58 379 aaKnown RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 TAS2R7Q9NYW3 318 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 ZIM2Q9NZV7 527 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 KCMF1Q9P0J7 381 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 DKK4Q9UBT3 224 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 BAIAP2L1Q9UHR4 511 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 SRPK3Q9UPE1 567 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 ASB4Q9Y574 426 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 PCDHGA3Q9Y5H0 932 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 URB1O60287 2271 aaKnown RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 ADAMTS20P59510 1910 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 PKD1L2Q7Z442 2459 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 CCDC187A0A096LP49 1063 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 C1orf226A1L170 272 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 BLACEA4D250 179 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 CCT8L1PA6NM43 557 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 GABRR3A8MPY1 467 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 CAPN14A8MX76 684 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 E9PBE3 544 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 PSMD12O00232 456 aaPredicted RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 EBAG9O00559 213 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 FCHO1O14526 889 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 DSCR3O14972 297 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 P2RX6O15547 441 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 ZNF749O43361 778 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 PCDH7O60245 1069 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 KLHL41O60662 606 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 TBX19O60806 448 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 SH3BGRLO75368 114 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 CSO75390 466 aaKnown RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 EEDO75530 441 aaKnown RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 CBX7O95931 251 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 IL6P05231 212 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 CD63P08962 238 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 FAM58BPP0C7Q3 252 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 SDC1P18827 310 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 TLX1P31314 330 aaPredicted RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 SSTR4P31391 388 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 SSR2P43308 183 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 PDX1P52945 283 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 MAPK12P53778 367 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 STX1BP61266 288 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 RPL38P63173 70 aaKnown RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 FOXM1Q08050 763 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 C2orf80Q0P641 193 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 ABHD18Q0P651 414 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 KLF10Q13118 480 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 STX5Q13190 355 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 RUNX2Q13950 521 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 SQLEQ14534 574 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 KRT72Q14CN4 511 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 NKPD1Q17RQ9 610 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 DEFB110Q30KQ9 67 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 DEFB134Q4QY38 66 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 DCAF12Q5T6F0 453 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 FAM219BQ5XKK7 198 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 TMEM198Q66K66 360 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 CEACAM20Q6UY09 585 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 IKBIPQ70UQ0 350 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 TRPM8Q7Z2W7 1104 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 R3HCC1LQ7Z5L2 792 aaKnown RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 TMEM132CQ8N3T6 1108 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 LIX1Q8N485 282 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 FITM2Q8N6M3 262 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 WDR36Q8NI36 951 aaKnown RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 RP9Q8TA86 221 aaKnown RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 C16orf78Q8WTQ4 265 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 RNF141Q8WVD5 230 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 STARD8Q92502 1023 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 TANKQ92844 425 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 TESCQ96BS2 214 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 COQ8BQ96D53 544 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 ANAPC16Q96DE5 110 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 CMTM5Q96DZ9 223 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 ZNF764Q96H86 408 aaPredicted RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 LRFN5Q96NI6 719 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 SPRY4Q9C004 299 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 DPY30Q9C005 99 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.98□□□□□ -1.29
CD44-228ENST00000528455 COPS7BQ9H9Q2 264 aaPredicted RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 ZNF304Q9HCX3 659 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 MYNNQ9NPC7 610 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 STARD5Q9NSY2 213 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 CUTCQ9NTM9 273 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 SLC39A1Q9NY26 324 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 GIMAP2Q9UG22 337 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 PHF11Q9UIL8 331 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 PSME2Q9UL46 239 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 DAPP1Q9UN19 280 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 DLGAP4Q9Y2H0 992 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 NAALAD2Q9Y3Q0 740 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 COPG1Q9Y678 874 aaKnown RBP6.98□□□□□ -1.29
CD44-228ENST00000528455 SPACA6W5XKT8 324 aa6.98□□□□□ -1.29
CD44-228ENST00000528455 KIF26BQ2KJY2 2108 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms