RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CBLBQ13191 982 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 SLAMF1Q13291 335 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 CAPN12Q6ZSI9 719 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 CHSY3Q70JA7 882 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 NAXEQ8NCW5 288 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 OR10G3Q8NGC4 313 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 NEIL3Q8TAT5 605 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 DOK4Q8TEW6 326 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 TSPAN17Q96FV3 270 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 FBXL20Q96IG2 436 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 SH3GL2Q99962 352 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 TRIM31Q9BZY9 425 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 QPCTLQ9NXS2 382 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 PLEKHA6Q9Y2H5 1048 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 HSPB2A8KAH6 182 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 PROM1O43490 865 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 FBXO45P0C2W1 286 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 PCNAP12004 261 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 TCP1P17987 556 aaKnown RBP21.67■■□□□ 1.06
CPSF1-202ENST00000527827 UQCRC1P31930 480 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 GMPRP36959 345 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 HSPB2Q16082 182 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 KHDRBS2Q5VWX1 349 aaKnown RBP21.67■■□□□ 1.06
CPSF1-202ENST00000527827 MED27Q6P2C8 311 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 LRRC70Q7Z2Q7 622 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 ZBED8Q8IZ13 594 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 RNF175Q8N4F7 328 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 OR7G3Q8NG95 312 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 UBE2E3Q969T4 207 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 RMND5BQ96G75 393 aaPredicted RBP21.67■■□□□ 1.06
CPSF1-202ENST00000527827 RBM18Q96H35 190 aaKnown RBP21.67■■□□□ 1.06
CPSF1-202ENST00000527827 UBXN10Q96LJ8 280 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 KRT12Q99456 494 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 GPR22Q99680 433 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 OR51B5Q9H339 312 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 RPF2Q9H7B2 306 aaKnown RBP21.67■■□□□ 1.06
CPSF1-202ENST00000527827 CNIH4Q9P003 139 aa21.67■■□□□ 1.06
CPSF1-202ENST00000527827 CNOT11Q9UKZ1 510 aaKnown RBP21.67■■□□□ 1.06
CPSF1-202ENST00000527827 FLNAP21333 2647 aaKnown RBP21.67■■□□□ 1.06
CPSF1-202ENST00000527827 KDM4EB2RXH2 506 aaPredicted RBP21.66■■□□□ 1.06
CPSF1-202ENST00000527827 LRATO95237 230 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 PEX19P40855 299 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 TRPC1P48995 793 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 PPP2R2AP63151 447 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 PLIN5Q00G26 463 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 FOXD4Q12950 439 aaPredicted RBP21.66■■□□□ 1.06
CPSF1-202ENST00000527827 BIKQ13323 160 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 ZKSCAN8Q15776 578 aaPredicted RBP21.66■■□□□ 1.06
CPSF1-202ENST00000527827 DEPDC1Q5TB30 811 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 C18orf63Q68DL7 685 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 OR4C11Q6IEV9 310 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 CDC20BQ86Y33 519 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 DND1Q8IYX4 353 aaKnown RBP21.66■■□□□ 1.06
CPSF1-202ENST00000527827 FAM13CQ8NE31 585 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 TNIP2Q8NFZ5 429 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 EXT2Q93063 718 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 CMTM7Q96FZ5 175 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 ART5Q96L15 291 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 DLL4Q9NR61 685 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 MS4A12Q9NXJ0 267 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 RNF112Q9ULX5 631 aa21.66■■□□□ 1.06
CPSF1-202ENST00000527827 A6NNC1 897 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 DYRK3O43781 588 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 PRKRAO75569 313 aaKnown RBP21.65■■□□□ 1.06
CPSF1-202ENST00000527827 ALOX15P16050 662 aaPredicted RBP21.65■■□□□ 1.06
CPSF1-202ENST00000527827 STMN1P16949 149 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 BMP5P22003 454 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 SSTR1P30872 391 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 CEACAM8P31997 349 aaPredicted RBP21.65■■□□□ 1.06
CPSF1-202ENST00000527827 HNRNPH2P55795 449 aaKnown RBP21.65■■□□□ 1.06
CPSF1-202ENST00000527827 HERVK_113P63132 956 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 ERVK-8P63133 956 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 TNFRSF17Q02223 184 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 PCDH1Q08174 1060 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 FLYWCH1Q4VC44 716 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 POMZP3Q6PJE2 187 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 GPR180Q86V85 440 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 CREG2Q8IUH2 290 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 TANKQ92844 425 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 JSRP1Q96MG2 331 aaPredicted RBP21.65■■□□□ 1.06
CPSF1-202ENST00000527827 GAL3ST4Q96RP7 486 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 RBBP8Q99708 897 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 ERVK-6Q9BXR3 956 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 PRM3Q9NNZ6 103 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.65■■□□□ 1.06
CPSF1-202ENST00000527827 CBLCQ9ULV8 474 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 ERVK-19Q9WJR5 959 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 KIAA1549Q9HCM3 1950 aa21.65■■□□□ 1.06
CPSF1-202ENST00000527827 DVL2O14641 736 aa21.64■■□□□ 1.05
CPSF1-202ENST00000527827 EPPINO95925 133 aa21.64■■□□□ 1.05
CPSF1-202ENST00000527827 S100BP04271 92 aaPredicted RBP21.64■■□□□ 1.05
CPSF1-202ENST00000527827 DNASE1P24855 282 aa21.64■■□□□ 1.05
CPSF1-202ENST00000527827 SERPINB3P29508 390 aa21.64■■□□□ 1.05
CPSF1-202ENST00000527827 SERPINB1P30740 379 aa21.64■■□□□ 1.05
CPSF1-202ENST00000527827 RPL21P46778 160 aaKnown RBP21.64■■□□□ 1.05
CPSF1-202ENST00000527827 ASCL1P50553 236 aa21.64■■□□□ 1.05
CPSF1-202ENST00000527827 WNT3P56703 355 aa21.64■■□□□ 1.05
CPSF1-202ENST00000527827 FBXL19-AS1Q494R0 122 aa21.64■■□□□ 1.05
CPSF1-202ENST00000527827 ACSF3Q4G176 576 aaPredicted RBP21.64■■□□□ 1.05
CPSF1-202ENST00000527827 ST13P4Q8IZP2 240 aaPredicted RBP21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms