RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 LCE3BQ5TA77 95 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 LIPNQ5VXI9 398 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 PTRHD1Q6GMV3 140 aaKnown RBP5.55□□□□□ -1.52
CD44-225ENST00000527326 JADE1Q6IE81 842 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 DENND1BQ6P3S1 775 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 ARHGAP11AQ6P4F7 1023 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 CFAP161Q6P656 301 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 C11orf88Q6PI97 169 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 RBMS3Q6XE24 437 aaKnown RBP5.55□□□□□ -1.52
CD44-225ENST00000527326 TPGS1Q6ZTW0 290 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 ZNF534Q76KX8 674 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 FAM122BQ7Z309 247 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 IFNEQ86WN2 208 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 KLBQ86Z14 1044 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 FUNDC1Q8IVP5 155 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 ABI1Q8IZP0 508 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 SLC34A3Q8N130 599 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 PLD6Q8N2A8 252 aaKnown RBP5.55□□□□□ -1.52
CD44-225ENST00000527326 FTMTQ8N4E7 242 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 ARRDC1Q8N5I2 433 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 TRAM1L1Q8N609 369 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 L3MBTL4Q8NA19 623 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 FBXL13Q8NEE6 735 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 OR10H5Q8NGA6 315 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 OR11H7Q8NGC8 314 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 OR14A16Q8NHC5 309 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 SPPL3Q8TCT6 385 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 SNX33Q8WV41 574 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 CHTF18Q8WVB6 975 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 CHFRQ96EP1 664 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 DIRAS2Q96HU8 199 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 FUBP3Q96I24 572 aaKnown RBP eCLIP5.55□□□□□ -1.52
CD44-225ENST00000527326 FCRL1Q96LA6 429 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 ACCSQ96QU6 501 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 CDCA3Q99618 268 aaPredicted RBP5.55□□□□□ -1.52
CD44-225ENST00000527326 PKMYT1Q99640 499 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 KCNJ15Q99712 375 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 MAP3K3Q99759 626 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 TMEM43Q9BTV4 400 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 NT5C1AQ9BXI3 368 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 C1QTNF6Q9BXI9 259 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 RIBC2Q9H4K1 309 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 TASP1Q9H6P5 420 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 GORASP2Q9H8Y8 452 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 SLC52A2Q9HAB3 445 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 IL1RL2Q9HB29 575 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 GOLGA2P5Q9HBQ8 144 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 EIF2B3Q9NR50 452 aaKnown RBP5.55□□□□□ -1.52
CD44-225ENST00000527326 DLL4Q9NR61 685 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 C1orf112Q9NSG2 853 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 NUDT15Q9NV35 164 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 MIOSQ9NXC5 875 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 SLCO1C1Q9NYB5 712 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 STOX2Q9P2F5 926 aaPredicted RBP5.55□□□□□ -1.52
CD44-225ENST00000527326 CPA4Q9UI42 421 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 TMEFF2Q9UIK5 374 aaPredicted RBP5.55□□□□□ -1.52
CD44-225ENST00000527326 FEM1BQ9UK73 627 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 NDRG2Q9UN36 371 aaKnown RBP5.55□□□□□ -1.52
CD44-225ENST00000527326 KCNIP3Q9Y2W7 256 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 ASB1Q9Y576 335 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 PCDHA1Q9Y5I3 950 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 NUBP2Q9Y5Y2 271 aa5.55□□□□□ -1.52
CD44-225ENST00000527326 COL5A2P05997 1499 aaPredicted RBP5.55□□□□□ -1.52
CD44-225ENST00000527326 KIAA1551Q9HCM1 1747 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 MEGF6O75095 1541 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ZNF541Q9H0D2 1346 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 TRAV19A0A0A6YYK7 116 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 A0A0U1RQF3 1178 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 TCRBV5S1A1TA0A578 114 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 TCRBV16S1A1N1A0A5B0 115 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 LCHNA4D1U4 455 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 TRAPPC13A5PLN9 417 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 METTL21EPA6NDL7 271 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 BTBD17A6NE02 478 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 CLCA1A8K7I4 914 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ERI2A8K979 691 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 DISC1C4P0D8 188 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 PRRT4C9JH25 899 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 TSTD3H0UI37 97 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 NDUFS8O00217 210 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ZNF197O14709 1029 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 IMPA2O14732 288 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 TOX3O15405 576 aaPredicted RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 MSH4O15457 936 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 EDIL3O43854 480 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 PIP5K1CO60331 668 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 EIF4EBP3O60516 100 aaPredicted RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 PRAMEF2O60811 474 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 AOC2O75106 756 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 MED6O75586 246 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 AQP8O94778 261 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 SCELO95171 688 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 HPP00738 406 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 POLBP06746 335 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 HCKP08631 526 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ATXN1LP0C7T5 689 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 CBSLP0DN79 551 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 CYP19A1P11511 503 aaPredicted RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 CBR1P16152 277 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 PPP3CBP16298 524 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 186.2 ms