RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 MAPK12P53778 367 aa19.14■□□□□ 0.65
VPS28-206ENST00000526734 KCNK10P57789 538 aa19.14■□□□□ 0.65
VPS28-206ENST00000526734 MPEG1Q2M385 716 aa19.14■□□□□ 0.65
VPS28-206ENST00000526734 CCNYL2Q5T2Q4 361 aa19.14■□□□□ 0.65
VPS28-206ENST00000526734 MTFR2Q6P444 385 aa19.14■□□□□ 0.65
VPS28-206ENST00000526734 BNC2Q6ZN30 1099 aaPredicted RBP19.14■□□□□ 0.65
VPS28-206ENST00000526734 RPS27LQ71UM5 84 aaKnown RBP19.14■□□□□ 0.65
VPS28-206ENST00000526734 COMMD6Q7Z4G1 85 aa19.14■□□□□ 0.65
VPS28-206ENST00000526734 GBP7Q8N8V2 638 aaPredicted RBP19.14■□□□□ 0.65
VPS28-206ENST00000526734 RDH11Q8TC12 318 aa19.14■□□□□ 0.65
VPS28-206ENST00000526734 MRPL1Q9BYD6 325 aaKnown RBP19.14■□□□□ 0.65
VPS28-206ENST00000526734 PLEKHB1Q9UF11 243 aaPredicted RBP19.14■□□□□ 0.65
VPS28-206ENST00000526734 GRID1Q9ULK0 1009 aa19.14■□□□□ 0.65
VPS28-206ENST00000526734 OR6C76A6NM76 312 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 PPP6CO00743 305 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 PDYNP01213 254 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 SHBGP04278 402 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 KLK1P06870 262 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 MYL2P10916 166 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 TSPAN8P19075 237 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 PIK3R1P27986 724 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 HMOX2P30519 316 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 ST13P50502 369 aaKnown RBP19.13■□□□□ 0.65
VPS28-206ENST00000526734 TRA2BP62995 288 aaKnown RBP19.13■□□□□ 0.65
VPS28-206ENST00000526734 SRSF11Q05519 484 aaKnown RBP19.13■□□□□ 0.65
VPS28-206ENST00000526734 SGO1Q5FBB7 561 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 ZYG11AQ6WRX3 759 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 DND1Q8IYX4 353 aaKnown RBP19.13■□□□□ 0.65
VPS28-206ENST00000526734 RIBC1Q8N443 379 aaPredicted RBP19.13■□□□□ 0.65
VPS28-206ENST00000526734 SLC15A4Q8N697 577 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 CDYL2Q8N8U2 506 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 GOLM1Q8NBJ4 401 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 MAGED4Q96JG8 741 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 SGCZQ96LD1 299 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 ANKZF1Q9H8Y5 726 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 VPS29Q9UBQ0 182 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 SUCOQ9UBS9 1254 aaKnown RBP19.13■□□□□ 0.65
VPS28-206ENST00000526734 MID2Q9UJV3 735 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 ZNF225Q9UK10 706 aa19.13■□□□□ 0.65
VPS28-206ENST00000526734 SPTBN1Q01082 2364 aaKnown RBP19.12■□□□□ 0.65
VPS28-206ENST00000526734 A0A1B0GTL3 188 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 A0A1W2PPM1 405 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 C1orf226A1L170 272 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 WWP2O00308 870 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 MANBAO00462 879 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 PEX1O43933 1283 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 ULK1O75385 1050 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 GBAP04062 536 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 CRHR1P34998 444 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 MEOX1P50221 254 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 NDUFAF5Q5TEU4 345 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 C6orf163Q5TEZ5 329 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 RTL4Q6ZR62 310 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 SH2D5Q6ZV89 423 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 SLC29A4Q7RTT9 530 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 MAMDC2Q7Z304 686 aaPredicted RBP19.12■□□□□ 0.65
VPS28-206ENST00000526734 SIAH3Q8IW03 269 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 GHDCQ8N2G8 530 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 ZFP62Q8NB50 900 aaPredicted RBP19.12■□□□□ 0.65
VPS28-206ENST00000526734 PSD4Q8NDX1 1056 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 OR4K14Q8NGD5 310 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 METTL6Q8TCB7 284 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 SLC22A8Q8TCC7 542 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 RIT1Q92963 219 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 FAIM2Q9BWQ8 316 aa19.12■□□□□ 0.65
VPS28-206ENST00000526734 FARSBQ9NSD9 589 aaKnown RBP19.12■□□□□ 0.65
VPS28-206ENST00000526734 TEX10Q9NXF1 929 aaPredicted RBP19.12■□□□□ 0.65
VPS28-206ENST00000526734 GOLGA6L10A6NI86 522 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 GLOD5A6NK44 160 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 NPIPA5E9PKD4 350 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 ASNA1O43681 348 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 SLC19A2O60779 497 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 PRKRAO75569 313 aaKnown RBP19.11■□□□□ 0.65
VPS28-206ENST00000526734 ESRRBO95718 433 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 PROCP04070 461 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 RNF224P0DH78 156 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 SOX3P41225 446 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 CA7P43166 264 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 SLCO1A2P46721 670 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 GALNT1Q10472 559 aaPredicted RBP19.11■□□□□ 0.65
VPS28-206ENST00000526734 TBL3Q12788 808 aaKnown RBP19.11■□□□□ 0.65
VPS28-206ENST00000526734 RNF111Q6ZNA4 994 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 SULF2Q8IWU5 870 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 HOMEZQ8IX15 550 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 CPSF7Q8N684 471 aaKnown RBP19.11■□□□□ 0.65
VPS28-206ENST00000526734 ZNF321PQ8N8H1 164 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 C16orf52Q8NHV5 167 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 PPWD1Q96BP3 646 aaKnown RBP19.11■□□□□ 0.65
VPS28-206ENST00000526734 CNPPD1Q9BV87 410 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 PSME2Q9UL46 239 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 EMCNQ9ULC0 261 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 NPIPA1Q9UND3 350 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 PCDHA9Q9Y5H5 950 aa19.11■□□□□ 0.65
VPS28-206ENST00000526734 TRGV8A0A0C4DH27 118 aa19.1■□□□□ 0.65
VPS28-206ENST00000526734 SERTM1A2A2V5 107 aa19.1■□□□□ 0.65
VPS28-206ENST00000526734 COPEO14579 308 aa19.1■□□□□ 0.65
VPS28-206ENST00000526734 TFECO14948 347 aaPredicted RBP19.1■□□□□ 0.65
VPS28-206ENST00000526734 PLIN3O60664 434 aa19.1■□□□□ 0.65
VPS28-206ENST00000526734 OR6B1O95007 311 aa19.1■□□□□ 0.65
VPS28-206ENST00000526734 NUDT17P0C025 328 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms