RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 FBXW2Q9UKT8 454 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 FIS1Q9Y3D6 152 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 ABCA12Q86UK0 2595 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 OR5H15A6NDH6 313 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 SLC28A1O00337 649 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 RGS14O43566 566 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 PRMT3O60678 531 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 GUCY1B2O75343 617 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 EEDO75530 441 aaKnown RBP9.48□□□□□ -0.89
VPS28-204ENST00000526054 UNC5CO95185 931 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 RASAL1O95294 804 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 WDPCPO95876 746 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 CRYABP02511 175 aaKnown RBP9.48□□□□□ -0.89
VPS28-204ENST00000526054 KLK1P06870 262 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 FGF4P08620 206 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 ITGAMP11215 1152 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 SERPINB3P29508 390 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 PPP2R1BP30154 601 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 BUD31P41223 144 aaPredicted RBP9.48□□□□□ -0.89
VPS28-204ENST00000526054 HSD17B7P56937 341 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 WDR4P57081 412 aaKnown RBP9.48□□□□□ -0.89
VPS28-204ENST00000526054 ABCE1P61221 599 aaKnown RBP9.48□□□□□ -0.89
VPS28-204ENST00000526054 HMGCS1Q01581 520 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 RHAGQ02094 409 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 TNFRSF17Q02223 184 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 ACSM2AQ08AH3 577 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 SLC13A2Q13183 592 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 STX3Q13277 289 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 NSDHLQ15738 373 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 CCNYL2Q5T2Q4 361 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 ABHD17BQ5VST6 288 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 FAM219BQ5XKK7 198 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 ACSM2BQ68CK6 577 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 TMEM205Q6UW68 189 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 SCIMPQ6UWF3 145 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 GFRALQ6UXV0 394 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 RNF165Q6ZSG1 346 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 COMMD6Q7Z4G1 85 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 GPR180Q86V85 440 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 C1orf52Q8N6N3 182 aaKnown RBP9.48□□□□□ -0.89
VPS28-204ENST00000526054 C7orf57Q8NEG2 295 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 RAB3IL1Q8TBN0 382 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 AGR3Q8TD06 166 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 TWIST2Q8WVJ9 160 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 HAS2Q92819 552 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 PTCHD1Q96NR3 888 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 CSF3RQ99062 836 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 MAPKAP1Q9BPZ7 522 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 TUBB6Q9BUF5 446 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 RNF32Q9H0A6 362 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 TNFRSF12AQ9NP84 129 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 FAM53CQ9NYF3 392 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 SUCOQ9UBS9 1254 aaKnown RBP9.48□□□□□ -0.89
VPS28-204ENST00000526054 TEKT2Q9UIF3 430 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 TRAF6Q9Y4K3 522 aa9.48□□□□□ -0.89
VPS28-204ENST00000526054 TRGV8A0A0C4DH27 118 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 FAM227AF5H4B4 570 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 CYR61O00622 381 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 TMPRSS11DO60235 418 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 PCDH7O60245 1069 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 PRAMEF2O60811 474 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 LYPLA1O75608 230 aaPredicted RBP9.47□□□□□ -0.89
VPS28-204ENST00000526054 RSL1D1O76021 490 aaKnown RBP9.47□□□□□ -0.89
VPS28-204ENST00000526054 MYO1DO94832 1006 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 FAM58BPP0C7Q3 252 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 NR2F6P10588 404 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 ICAM2P13598 275 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 CHN1P15882 459 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 TPP2P29144 1249 aaPredicted RBP9.47□□□□□ -0.89
VPS28-204ENST00000526054 SLC1A6P48664 564 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 EFNA3P52797 238 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 MAPK12P53778 367 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 HNRNPH2P55795 449 aaKnown RBP9.47□□□□□ -0.89
VPS28-204ENST00000526054 PPP2R2AP63151 447 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 TBL3Q12788 808 aaKnown RBP9.47□□□□□ -0.89
VPS28-204ENST00000526054 SPDYAQ5MJ70 313 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 ATG16L1Q676U5 607 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 MRM1Q6IN84 353 aaKnown RBP9.47□□□□□ -0.89
VPS28-204ENST00000526054 LANCL3Q6ZV70 420 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 TRIM46Q7Z4K8 759 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 CPEB2Q7Z5Q1 589 aaKnown RBP9.47□□□□□ -0.89
VPS28-204ENST00000526054 ANKRD37Q7Z713 158 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 SCUBE1Q8IWY4 988 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 DDIASQ8IXT1 998 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 SHISA5Q8N114 240 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 CHTF18Q8WVB6 975 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 TSLPQ969D9 159 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 RELTQ969Z4 430 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 METTL2AQ96IZ6 378 aaKnown RBP9.47□□□□□ -0.89
VPS28-204ENST00000526054 LPAR4Q99677 370 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 PFDN4Q9NQP4 134 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 KCMF1Q9P0J7 381 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 ABI3Q9P2A4 366 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 SEC14L3Q9UDX4 400 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 MCM8Q9UJA3 840 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 SH3BGRL2Q9UJC5 107 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.47□□□□□ -0.89
VPS28-204ENST00000526054 RAP2CQ9Y3L5 183 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 DNAJC15Q9Y5T4 150 aa9.47□□□□□ -0.89
VPS28-204ENST00000526054 IGKV3D-11A0A0A0MRZ8 115 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms