RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CMTM8Q8IZV2 173 aa9.2□□□□□ -0.94
VCAN-210ENST00000513960 LSMEM1Q8N8F7 131 aa9.2□□□□□ -0.94
VCAN-210ENST00000513960 FAM46DQ8NEK8 389 aa9.2□□□□□ -0.94
VCAN-210ENST00000513960 PIGKQ92643 395 aa9.2□□□□□ -0.94
VCAN-210ENST00000513960 RNFT2Q96EX2 444 aa9.2□□□□□ -0.94
VCAN-210ENST00000513960 SLC35A5Q9BS91 424 aa9.2□□□□□ -0.94
VCAN-210ENST00000513960 IL21Q9HBE4 155 aa9.2□□□□□ -0.94
VCAN-210ENST00000513960 HHATLQ9HCP6 504 aa9.2□□□□□ -0.94
VCAN-210ENST00000513960 A0A075B6Q4 140 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 LOC105369274A0A096LPK9 316 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 SRCP12931 536 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 ARSBP15848 533 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 PTNP21246 168 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 AKR1D1P51857 326 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 RPS26P62854 115 aaKnown RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 KCNJ10P78508 379 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 DBPQ10586 325 aaPredicted RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 EIF4HQ15056 248 aaKnown RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 ZMYND11Q15326 602 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 P2RY14Q15391 338 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 CDKN3Q16667 212 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 CDONQ4KMG0 1287 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 SLC35F1Q5T1Q4 408 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 MPP7Q5T2T1 576 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 HTR3DQ70Z44 454 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 TMCO2Q7Z6W1 182 aaPredicted RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 MARCH9Q86YJ5 346 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 OR4N4Q8N0Y3 316 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 POLR2J3Q9H1A7 115 aaKnown RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 LINC00597Q9H2U6 94 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 NMNAT1Q9HAN9 279 aaPredicted RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 SGK2Q9HBY8 427 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 PPIEQ9UNP9 301 aaKnown RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 PCDHB11Q9Y5F2 797 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 PCDHGA2Q9Y5H1 932 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 KCNE2Q9Y6J6 123 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 C6orf47O95873 294 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 OLFM2O95897 454 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 GASTP01350 101 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 FCER2P06734 321 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 C8GP07360 202 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 GJA1P17302 382 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 LAG3P18627 525 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 RECQLP46063 649 aaPredicted RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 C2orf80Q0P641 193 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 FCN2Q15485 313 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 LRIF1Q5T3J3 769 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 CPXM2Q8N436 756 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 BEST4Q8NFU0 473 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 OR52P1PQ8NH57 321 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 ANGPTL6Q8NI99 470 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 CEP76Q8TAP6 659 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 USP7Q93009 1102 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 POP5Q969H6 163 aaKnown RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 CD84Q9UIB8 345 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 ANKDD1BA6NHY2 528 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 CCR7P32248 378 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 CTSOP43234 321 aaPredicted RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 BTN1A1Q13410 526 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 CDKL4Q5MAI5 379 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 COX20Q5RI15 118 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 CNKSR3Q6P9H4 555 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 ZNF852Q6ZMS4 543 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 GAREM2Q75VX8 874 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 LRRC70Q7Z2Q7 622 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 ADGRD2Q7Z7M1 963 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 LHFPL3Q86UP9 236 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 NPAS3Q8IXF0 933 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 GDPD1Q8N9F7 314 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 C11orf24Q96F05 449 aaPredicted RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 CMTM7Q96FZ5 175 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 NXF2Q9GZY0 626 aaKnown RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 SERHL2Q9H4I8 314 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 ASAH2Q9NR71 780 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.19□□□□□ -0.94
VCAN-210ENST00000513960 DNAJC11Q9NVH1 559 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 TXNL4BQ9NX01 149 aaKnown RBP9.19□□□□□ -0.94
VCAN-210ENST00000513960 NINQ8N4C6 2090 aa9.19□□□□□ -0.94
VCAN-210ENST00000513960 A0A1W2PRU2 124 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 LEUTXA8MZ59 168 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 POP4O95707 220 aaKnown RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 DHFRP00374 187 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 SLC16A1P53985 500 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 POLR2LP62875 67 aaKnown RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 SELENOWP63302 87 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 TLE2Q04725 743 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 ASAH1Q13510 395 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 HEPACAMQ14CZ8 416 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 RGNQ15493 299 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 ZDHHC20Q5W0Z9 365 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 C22orf39Q6P5X5 142 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 FAM124AQ86V42 546 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 LYSMD1Q96S90 227 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 BRD9Q9H8M2 597 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 ASIC5Q9NY37 505 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 PTGFRNQ9P2B2 879 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 KLHL42Q9P2K6 505 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 VPS29Q9UBQ0 182 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 ENOPH1Q9UHY7 261 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 GPR52Q9Y2T5 361 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms