RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SLC19A2O60779 497 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 SCRG1O75711 98 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 TOMM40O96008 361 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 TPOP07202 933 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ACP5P13686 325 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 IGFBP2P18065 325 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 HLA-DPA1P20036 260 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 PTMSP20962 102 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 IL4RP24394 825 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 CCKARP32238 428 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 RORAP35398 523 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 PEX19P40855 299 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 SLC1A1P43005 524 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 RGRP47804 291 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 SOX2P48431 317 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ARSFP54793 590 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 AIMP2Q13155 320 aaKnown RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 NFATC2Q13469 925 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 NCF4Q15080 339 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 KRT31Q15323 416 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 GPR33Q49SQ1 333 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 BCL7AQ4VC05 210 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 MIDNQ504T8 468 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 PPP6R3Q5H9R7 873 aaPredicted RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 LRRC73Q5JTD7 316 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 FAM209BQ5JX69 171 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 DNTTIP2Q5QJE6 756 aaKnown RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 CCDC181Q5TID7 509 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 SHEQ5VZ18 495 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ARMC3Q5W041 872 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ZNF324BQ6AW86 544 aaPredicted RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 RHBDD2Q6NTF9 364 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 WDR93Q6P2C0 686 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 SARM1Q6SZW1 724 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 PAMR1Q6UXH9 720 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 C9orf47Q6ZRZ4 202 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 CYP4V2Q6ZWL3 525 aaPredicted RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 C11orf96Q7Z7L8 435 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 DSELQ8IZU8 1212 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 PYROXD2Q8N2H3 581 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 NPWQ8N729 165 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ADPRHL1Q8NDY3 354 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 CATSPER1Q8NEC5 780 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ACVR1CQ8NER5 493 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ARRDC2Q8TBH0 407 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ADAMTS15Q8TE58 950 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 NR4A3Q92570 626 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 MR1Q95460 341 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 SLC22A18Q96BI1 424 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 TADA1Q96BN2 335 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 PTERQ96BW5 349 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ULK4Q96C45 1275 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 IMP4Q96G21 291 aaKnown RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 LYZL4Q96KX0 146 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 GPR78Q96P69 363 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 TAAR6Q96RI8 345 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 SECISBP2Q96T21 854 aaKnown RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 PCDHB18PQ96TA0 734 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ELOVL1Q9BW60 279 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 SLC25A51Q9H1U9 297 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 SLC26A1Q9H2B4 701 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 TFB2MQ9H5Q4 396 aaKnown RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 AAMDCQ9H7C9 122 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 MVB12BQ9H7P6 319 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 RBM22Q9NW64 420 aaKnown RBP eCLIP3.69□□□□□ -1.82
USP54-217ENST00000498213 UTP6Q9NYH9 597 aaKnown RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 STMN3Q9NZ72 180 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 OR6C2Q9NZP2 312 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 IL17CQ9P0M4 197 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 ATXN10Q9UBB4 475 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 POLG2Q9UHN1 485 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 MEMO1Q9Y316 297 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.69□□□□□ -1.82
USP54-217ENST00000498213 LRP4O75096 1905 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 CHD3Q12873 2000 aaKnown RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 FAM237BA0A1B0GVD1 139 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 SYNDIG1LA6NDD5 238 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 OR2W5A6NFC9 320 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 AGAP14A8MT82 685 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 SMTNL1A8MU46 457 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 C2orf74A8MZ97 194 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 E7EQ34 232 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 IFRD1O00458 451 aaPredicted RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 SOCS6O14544 535 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 ARHGEF9O43307 516 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 ANXA9O76027 345 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 AP2A2O94973 939 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 CALCAP01258 141 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 RPN2P04844 631 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 TPM3P06753 285 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 SLC35G4P0C7Q5 338 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 ICAM2P13598 275 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 ZNF8P17098 575 aaPredicted RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 MMP11P24347 488 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 OTX2P32243 289 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 DEKP35659 375 aaKnown RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 CDKN2AP42771 156 aaKnown RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 ZNF84P51523 738 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 RELAQ04206 551 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 UBXN1Q04323 297 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms