RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 FRMD6Q96NE9 622 aa16.83■□□□□ 0.28
COL9A3-214ENST00000490398 PARD6BQ9BYG5 372 aa16.83■□□□□ 0.28
COL9A3-214ENST00000490398 ACPTQ9BZG2 426 aa16.83■□□□□ 0.28
COL9A3-214ENST00000490398 SHCBP1LQ9BZQ2 653 aa16.83■□□□□ 0.28
COL9A3-214ENST00000490398 PPCSQ9HAB8 311 aa16.83■□□□□ 0.28
COL9A3-214ENST00000490398 BRF2Q9HAW0 419 aa16.83■□□□□ 0.28
COL9A3-214ENST00000490398 GRID1Q9ULK0 1009 aa16.83■□□□□ 0.28
COL9A3-214ENST00000490398 OSGIN2Q9Y236 505 aa16.83■□□□□ 0.28
COL9A3-214ENST00000490398 PCDHGB6Q9Y5F9 930 aa16.83■□□□□ 0.28
COL9A3-214ENST00000490398 HIVEP3Q5T1R4 2406 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 NME2P1O60361 137 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 CPA3P15088 417 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 NME2P22392 152 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 SERPINB3P29508 390 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 HMOX2P30519 316 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 TLX1P31314 330 aaPredicted RBP16.82■□□□□ 0.28
COL9A3-214ENST00000490398 RAE1P78406 368 aaKnown RBP16.82■□□□□ 0.28
COL9A3-214ENST00000490398 MAPKAPK3Q16644 382 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 C10orf62Q5T681 223 aaPredicted RBP16.82■□□□□ 0.28
COL9A3-214ENST00000490398 NDUFAF5Q5TEU4 345 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 EMBQ6PCB8 327 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 TRABD2AQ86V40 505 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 CPSF7Q8N684 471 aaKnown RBP16.82■□□□□ 0.28
COL9A3-214ENST00000490398 APIPQ96GX9 242 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 C5orf34Q96MH7 638 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 PSMG3-AS1Q96PY0 264 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 RASL10BQ96S79 203 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 MID1IP1Q9NPA3 183 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 OXSMQ9NWU1 459 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 MYOTQ9UBF9 498 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 LGALS13Q9UHV8 139 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 ADAM29Q9UKF5 820 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 CES1P1Q9UKY3 287 aa16.82■□□□□ 0.28
COL9A3-214ENST00000490398 POLEQ07864 2286 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 ASPDHA6ND91 283 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 FCHO1O14526 889 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 SPAG7O75391 227 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 ESRRBO95718 433 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 MLYCDO95822 493 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 KRT6AP02538 564 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 KRT6BP04259 564 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 CT62P0C5K7 136 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 RFC3P40938 356 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 SOX3P41225 446 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 KRT6CP48668 564 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 SSR4P51571 173 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 PKNOX1P55347 436 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 DNAJB13P59910 316 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 ERVK-8P63133 956 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 DUSP2Q05923 314 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 ELOAQ14241 798 aaKnown RBP16.81■□□□□ 0.28
COL9A3-214ENST00000490398 ZNF267Q14586 743 aaPredicted RBP16.81■□□□□ 0.28
COL9A3-214ENST00000490398 PCLAFQ15004 111 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 CCDC153Q494R4 210 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 OR52E8Q6IFG1 317 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 FAM180BQ6P0A1 224 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 FRMD7Q6ZUT3 714 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 C10orf107Q8IVU9 208 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 ST13P4Q8IZP2 240 aaPredicted RBP16.81■□□□□ 0.28
COL9A3-214ENST00000490398 BANPQ8N9N5 519 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 CCDC63Q8NA47 563 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 CHTF18Q8WVB6 975 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 RBM18Q96H35 190 aaKnown RBP16.81■□□□□ 0.28
COL9A3-214ENST00000490398 CNPPD1Q9BV87 410 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 AHSPQ9NZD4 102 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 SLC17A7Q9P2U7 560 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 VPS29Q9UBQ0 182 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 ERVK-19Q9WJR5 959 aa16.81■□□□□ 0.28
COL9A3-214ENST00000490398 YARS2Q9Y2Z4 477 aaKnown RBP16.81■□□□□ 0.28
COL9A3-214ENST00000490398 A0A0G2JMM0 328 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 A0A1W2PPB8 328 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 A0A1W2PRS3 328 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 KIR3DP1A8MWS1 328 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 ULK1O75385 1050 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 UNC5CO95185 931 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 SOX18P35713 384 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 NR0B1P51843 470 aaKnown RBP16.8■□□□□ 0.28
COL9A3-214ENST00000490398 MAPK12P53778 367 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 PLIN5Q00G26 463 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 CSTF3Q12996 717 aaKnown RBP16.8■□□□□ 0.28
COL9A3-214ENST00000490398 IL20RBQ6UXL0 311 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 PAGE2Q7Z2X7 111 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 SIAH3Q8IW03 269 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 SULF2Q8IWU5 870 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 CYP4Z2PQ8N1L4 340 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 TMEM156Q8N614 296 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 TMEM178AQ8NBL3 297 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 DNAJB8Q8NHS0 232 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 FBXL20Q96IG2 436 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 GATA5Q9BWX5 397 aaPredicted RBP16.8■□□□□ 0.28
COL9A3-214ENST00000490398 WDR41Q9HAD4 459 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 DEPPQ9NTK1 212 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 HEY2Q9UBP5 337 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 PLLPQ9Y342 182 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 PCDHA9Q9Y5H5 950 aa16.8■□□□□ 0.28
COL9A3-214ENST00000490398 SPTAN1Q13813 2472 aaKnown RBP16.8■□□□□ 0.28
COL9A3-214ENST00000490398 PINLYPA6NC86 204 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 SYNDIG1LA6NDD5 238 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 OR10H2O60403 315 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 NADKO95544 446 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms