RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 IGKV3-11P04433 115 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 HTR1EP28566 365 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 SMSP52788 366 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 C3P1Q6ZMU1 363 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 RTL4Q6ZR62 310 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 C9orf40Q8IXQ3 194 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 ST13P4Q8IZP2 240 aaPredicted RBP21.3■■□□□ 1
COL9A3-213ENST00000489045 OR52N2Q8NGI0 321 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 DOK4Q8TEW6 326 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 FBXL20Q96IG2 436 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 ART5Q96L15 291 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 SERPINI1Q99574 410 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 MRPL57Q9BQC6 102 aaKnown RBP21.3■■□□□ 1
COL9A3-213ENST00000489045 MRPL46Q9H2W6 279 aaKnown RBP21.3■■□□□ 1
COL9A3-213ENST00000489045 SEMA4BQ9NPR2 832 aaPredicted RBP21.3■■□□□ 1
COL9A3-213ENST00000489045 NFU1Q9UMS0 254 aa21.3■■□□□ 1
COL9A3-213ENST00000489045 EXOC1LA0A1B0GW35 172 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 SEMA3DO95025 777 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 GPR75O95800 540 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 AIFM1O95831 613 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 RPS17P08708 135 aaKnown RBP21.29■■□□□ 1
COL9A3-213ENST00000489045 SNRPAP09012 282 aaKnown RBP21.29■■□□□ 1
COL9A3-213ENST00000489045 PTGS2P35354 604 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 PLGLB1Q02325 96 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 ASPHQ12797 758 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 FRG2Q64ET8 278 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 TTC19Q6DKK2 380 aaPredicted RBP21.29■■□□□ 1
COL9A3-213ENST00000489045 OPN5Q6U736 354 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 RPS27LQ71UM5 84 aaKnown RBP21.29■■□□□ 1
COL9A3-213ENST00000489045 TICAM1Q8IUC6 712 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 NUBPLQ8TB37 319 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 FRG2BQ96QU4 278 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 PELOQ9BRX2 385 aaKnown RBP21.29■■□□□ 1
COL9A3-213ENST00000489045 CNPPD1Q9BV87 410 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 WDR41Q9HAD4 459 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 DNAJC13O75165 2243 aa21.29■■□□□ 1
COL9A3-213ENST00000489045 FAM166BA8MTA8 275 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 OR10H2O60403 315 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 TPOP07202 933 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 SBK3P0C264 359 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 AGAP20933 346 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 HERVK_113P63132 956 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 ERVK-8P63133 956 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 ZNF630Q2M218 657 aaPredicted RBP21.28■■□□□ 1
COL9A3-213ENST00000489045 MPEG1Q2M385 716 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 SPRED3Q2MJR0 410 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 GGTA1PQ4G0N0 100 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 PIGGQ5H8A4 983 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 CD163Q86VB7 1156 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 GOLM1Q8NBJ4 401 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 OR4F6Q8NGB9 312 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 KIF18AQ8NI77 898 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 FAM57AQ8TBR7 257 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 UCN3Q969E3 161 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 SGCZQ96LD1 299 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 ERVK-6Q9BXR3 956 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 DEFB127Q9H1M4 99 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 PLSCR2Q9NRY7 297 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 TEX10Q9NXF1 929 aaPredicted RBP21.28■■□□□ 1
COL9A3-213ENST00000489045 ERVK-19Q9WJR5 959 aa21.28■■□□□ 1
COL9A3-213ENST00000489045 APCP25054 2843 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 A0A1B0GTL3 188 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 A8MT66 165 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 E9PLN8 166 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 ACOT7O00154 380 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 ADAM10O14672 748 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 PDE9AO76083 593 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 ABHD2P08910 425 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 PRF1P14222 555 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 GCAP28676 217 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 NR0B1P51843 470 aaKnown RBP21.27■■□□□ 1
COL9A3-213ENST00000489045 PPIAP62937 165 aaKnown RBP21.27■■□□□ 1
COL9A3-213ENST00000489045 IFT88Q13099 833 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 ZNF267Q14586 743 aaPredicted RBP21.27■■□□□ 1
COL9A3-213ENST00000489045 CDSNQ15517 529 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 GK5Q6ZS86 529 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 MILR1Q7Z6M3 343 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 CEP112Q8N8E3 955 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 ZNF483Q8TF39 744 aaPredicted RBP21.27■■□□□ 1
COL9A3-213ENST00000489045 PHF10Q8WUB8 498 aaKnown RBP21.27■■□□□ 1
COL9A3-213ENST00000489045 DMRTA2Q96SC8 542 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 VKORC1Q9BQB6 163 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 FAM173AQ9BQD7 235 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 MRPL1Q9BYD6 325 aaKnown RBP21.27■■□□□ 1
COL9A3-213ENST00000489045 TTTY12Q9BZ98 90 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.27■■□□□ 12e-7■□□□□ 10.8
COL9A3-213ENST00000489045 CREBBPQ92793 2442 aa21.27■■□□□ 1
COL9A3-213ENST00000489045 NADKO95544 446 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-213ENST00000489045 CCL3P10147 92 aa21.26■□□□□ 0.99
COL9A3-213ENST00000489045 TSPAN8P19075 237 aa21.26■□□□□ 0.99
COL9A3-213ENST00000489045 CNR1P21554 472 aa21.26■□□□□ 0.99
COL9A3-213ENST00000489045 SGO1Q5FBB7 561 aa21.26■□□□□ 0.99
COL9A3-213ENST00000489045 C10orf62Q5T681 223 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-213ENST00000489045 OR52E8Q6IFG1 317 aa21.26■□□□□ 0.99
COL9A3-213ENST00000489045 ARHGAP11AQ6P4F7 1023 aa21.26■□□□□ 0.99
COL9A3-213ENST00000489045 FAM47EQ6ZV65 393 aa21.26■□□□□ 0.99
COL9A3-213ENST00000489045 LURAP1LQ8IV03 231 aa21.26■□□□□ 0.99
COL9A3-213ENST00000489045 EID3Q8N140 333 aa21.26■□□□□ 0.99
COL9A3-213ENST00000489045 TMEM151AQ8N4L1 468 aa21.26■□□□□ 0.99
COL9A3-213ENST00000489045 SLC22A8Q8TCC7 542 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms