RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 MAGEB1P43366 347 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 IER3P46695 156 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 CCR4P51679 360 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 NDST1P52848 882 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 AKAP17AQ02040 695 aaKnown RBP2.15□□□□□ -2.07
VPS50-216ENST00000484954 KCTD2Q14681 263 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 EMC2Q15006 297 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 SPHARQ15513 63 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 CNPY1Q3B7I2 92 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 ODF2Q5BJF6 829 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 MPP7Q5T2T1 576 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 AGAP6Q5VW22 663 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 CASC4Q6P4E1 433 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 GCNT7Q6ZNI0 430 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 ITIH5Q86UX2 942 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 BEST4Q8NFU0 473 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 LINC01006Q8NI28 216 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 SETD6Q8TBK2 473 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 SPATA18Q8TC71 538 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 VN1R17PQ8TDU5 208 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 PIWIL1Q96J94 861 aaKnown RBP2.15□□□□□ -2.07
VPS50-216ENST00000484954 C17orf62Q9BQA9 187 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 ST6GALNAC5Q9BVH7 336 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 IDI2Q9BXS1 227 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 WWP1Q9H0M0 922 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 CUEDC2Q9H467 287 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 DPEP3Q9H4B8 488 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 ADGRL4Q9HBW9 690 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 SPG21Q9NZD8 308 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 CFDP1Q9UEE9 299 aaPredicted RBP2.15□□□□□ -2.07
VPS50-216ENST00000484954 GIMAP2Q9UG22 337 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 POMT1Q9Y6A1 747 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 A0A087X0K7 114 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 MAGEB16A2A368 324 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 EPOPA6NHQ4 379 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 PANO1I0J062 215 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 CCSO14618 274 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 CHUKO15111 745 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 EIF5BO60841 1220 aaKnown RBP2.14□□□□□ -2.07
VPS50-216ENST00000484954 LYPD3O95274 346 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 APOA4P06727 396 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 SBK2P0C263 348 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 FNTAP49354 379 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 RIPK4P57078 832 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 ERVPABLB-1P60509 514 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 GSTO1P78417 241 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 SLC3A1Q07837 685 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 KIAA0040Q15053 153 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 SNRNP48Q6IEG0 339 aaKnown RBP2.14□□□□□ -2.07
VPS50-216ENST00000484954 NHLRC1Q6VVB1 395 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 CYP4V2Q6ZWL3 525 aaPredicted RBP2.14□□□□□ -2.07
VPS50-216ENST00000484954 OTOAQ7RTW8 1153 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 CEND1Q8N111 149 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 GVQW1Q8N7I0 195 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 NHLRC2Q8NBF2 726 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 TCP11Q8WWU5 503 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 PRCCQ92733 491 aaPredicted RBP2.14□□□□□ -2.07
VPS50-216ENST00000484954 C16orf58Q96GQ5 468 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 SSX3Q99909 188 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 BAG1Q99933 345 aaPredicted RBP2.14□□□□□ -2.07
VPS50-216ENST00000484954 ASB8Q9H765 288 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 EIF3KQ9UBQ5 218 aaKnown RBP2.14□□□□□ -2.07
VPS50-216ENST00000484954 PRODH2Q9UF12 536 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 ACEP12821 1306 aa2.14□□□□□ -2.07
VPS50-216ENST00000484954 IGHV3OR16-12A0A075B7B8 117 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 FRG2CA6NGY1 282 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 ZFP92A6NM28 416 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 SLC30A4O14863 429 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 PDGFBP01127 241 aaPredicted RBP2.13□□□□□ -2.07
VPS50-216ENST00000484954 LAMP1P11279 417 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 IFNAR1P17181 557 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 PPP2R1BP30154 601 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 IL2RGP31785 369 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 STX17P56962 302 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 TFCP2Q12800 502 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 SLC10A1Q14973 349 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 TWISTNBQ3B726 338 aaPredicted RBP2.13□□□□□ -2.07
VPS50-216ENST00000484954 PAN3Q58A45 887 aaKnown RBP2.13□□□□□ -2.07
VPS50-216ENST00000484954 ACER2Q5QJU3 275 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 SHQ1Q6PI26 577 aaKnown RBP2.13□□□□□ -2.07
VPS50-216ENST00000484954 DCLRE1AQ6PJP8 1040 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 Q6ZRG5 221 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 FAM47EQ6ZV65 393 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 PRSS48Q7RTY5 328 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 GLRX5Q86SX6 157 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 C4orf19Q8IY42 314 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 THNSL1Q8IYQ7 743 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 CCDC89Q8N998 374 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 TRPV3Q8NET8 790 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 CRYGNQ8WXF5 182 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 GBP5Q96PP8 586 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 AGPAT1Q99943 283 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 AP1M1Q9BXS5 423 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 NUSAP1Q9BXS6 441 aaKnown RBP2.13□□□□□ -2.07
VPS50-216ENST00000484954 SRD5A3Q9H8P0 318 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 SLC25A19Q9HC21 320 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 TECRQ9NZ01 308 aaKnown RBP2.13□□□□□ -2.07
VPS50-216ENST00000484954 CHD4Q14839 1912 aa2.13□□□□□ -2.07
VPS50-216ENST00000484954 EFCAB7A8K855 629 aa2.12□□□□□ -2.07
VPS50-216ENST00000484954 IGHV3-9P01782 118 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms