RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 RPL26P61254 145 aaKnown RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 ELF3P78545 371 aaPredicted RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 ELAVL2Q12926 359 aaKnown RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 ITGB3BPQ13352 177 aaPredicted RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 ORC2Q13416 577 aaPredicted RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 PNOCQ13519 176 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 UGCGQ16739 394 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 IRGCQ6NXR0 463 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 TRPM8Q7Z2W7 1104 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 SPATA21Q7Z572 469 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 ANKRD23Q86SG2 305 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 TTC5Q8N0Z6 440 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 LRTM2Q8N967 370 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 P2RX5Q93086 422 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 C2orf48Q96LS8 159 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 GBP5Q96PP8 586 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 TMEM237Q96Q45 408 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 OVOL2Q9BRP0 275 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 DESI2Q9BSY9 194 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 TCHPQ9BT92 498 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 NACAP1Q9BZK3 213 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 SNX25Q9H3E2 840 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 BOLA2Q9H3K6 86 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 MTHFD2LQ9H903 347 aaPredicted RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 NDE1Q9NXR1 346 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 NUDT4Q9NZJ9 180 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 PKD2L2Q9NZM6 624 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 IL36AQ9UHA7 158 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 PA2G4Q9UQ80 394 aaKnown RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 WIPI2Q9Y4P8 454 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 LRRC42Q9Y546 428 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 COMMD3-BMI1R4GMX3 469 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 AFDNP55196 1824 aaKnown RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 ABCA3Q99758 1704 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 A0A087WV48 116 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 A0A0D9SFI3 127 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 A0A1W2PPW3 197 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 CCDC162PA2VCL2 907 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 C17orf105B2RV13 164 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 BIRC5O15392 142 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 TIMM44O43615 452 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 IDH3BO43837 385 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 E2F6O75461 281 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 LCA5LO95447 670 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 GAS8O95995 478 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 GYPCP04921 128 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 IGKV5-2P06315 115 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 CLTAP09496 248 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 F3P13726 295 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 CD59P13987 128 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 FDPSP14324 419 aaKnown RBP4.96□□□□□ -1.62
USP40-213ENST00000483216 NQO1P15559 274 aaKnown RBP4.96□□□□□ -1.62
USP40-213ENST00000483216 IFNAR1P17181 557 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 ATP6V1C1P21283 382 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 CALB2P22676 271 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 CALML3P27482 149 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 SFTPDP35247 375 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 LONP1P36776 959 aaKnown RBP4.96□□□□□ -1.62
USP40-213ENST00000483216 SERPINB8P50452 374 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 KRTAP10-5P60370 271 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 SLC1A5Q15758 541 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 SNAI3Q3KNW1 292 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 CCDC92Q53HC0 331 aaPredicted RBP4.96□□□□□ -1.62
USP40-213ENST00000483216 CES4AQ5XG92 561 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 GALNT17Q6IS24 598 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 CCDC80Q76M96 950 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 CPEB2Q7Z5Q1 589 aaKnown RBP4.96□□□□□ -1.62
USP40-213ENST00000483216 NRARPQ7Z6K4 114 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 SPATA24Q86W54 205 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 CROCCP3Q8IVE0 287 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 FAM219AQ8IW50 185 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 C9orf43Q8TAL5 461 aaPredicted RBP4.96□□□□□ -1.62
USP40-213ENST00000483216 NSMAFQ92636 917 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 ANKRD9Q96BM1 317 aaPredicted RBP4.96□□□□□ -1.62
USP40-213ENST00000483216 PYCR2Q96C36 320 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 RADILQ96JH8 1075 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 AK8Q96MA6 479 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 CCDC43Q96MW1 224 aaKnown RBP4.96□□□□□ -1.62
USP40-213ENST00000483216 ZIM3Q96PE6 472 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 TSG101Q99816 390 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 UBAC1Q9BSL1 405 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 LRRC61Q9BV99 259 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 HSD3B7Q9H2F3 369 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 MMADHCQ9H3L0 296 aaPredicted RBP4.96□□□□□ -1.62
USP40-213ENST00000483216 DCLRE1BQ9H816 532 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 NHEJ1Q9H9Q4 299 aaPredicted RBP4.96□□□□□ -1.62
USP40-213ENST00000483216 PFDN4Q9NQP4 134 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 TBC1D13Q9NVG8 400 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 AIPL1Q9NZN9 384 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 ARL2BPQ9Y2Y0 163 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 SLIT2O94813 1529 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 UBR2Q8IWV8 1755 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 ARFGEF2Q9Y6D5 1785 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 PCDH11XQ9BZA7 1347 aa4.96□□□□□ -1.62
USP40-213ENST00000483216 COL5A2P05997 1499 aaPredicted RBP4.95□□□□□ -1.62
USP40-213ENST00000483216 RTL9Q8NET4 1388 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 PAPPAQ13219 1627 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 SMIM31A0A1B0GVY4 71 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 MTMR11A4FU01 709 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 EPM2AB3EWF7 344 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms