RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 KRT84Q9NSB2 600 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 SIRT5Q9NXA8 310 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 TAS2R9Q9NYW1 312 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 PCDHGA10Q9Y5H3 936 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 LRRC72A6NJI9 287 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 CAPN5O15484 640 aaPredicted RBP13.7□□□□□ -0.22
CHD3-211ENST00000481999 C8orf89P0DMQ9 161 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 PVRP15151 417 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 NR4A1P22736 598 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 MAOBP27338 520 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 CHI3L1P36222 383 aaPredicted RBP13.7□□□□□ -0.22
CHD3-211ENST00000481999 HSD17B2P37059 387 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 KIAA1024LP59773 190 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 MVKQ03426 396 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 GPR18Q14330 331 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 HMGN2P46Q86SG4 172 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 CENPSQ8N2Z9 138 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 SVOPQ8N4V2 548 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 NFKBIDQ8NI38 313 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 DNASE1L2Q92874 299 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 FOXQ1Q9C009 403 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 TMEM74BQ9NUR3 256 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 ERGIC3Q9Y282 383 aa13.7□□□□□ -0.22
CHD3-211ENST00000481999 CLDN25C9JDP6 229 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 DNAJB6O75190 326 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 SULT1C4O75897 302 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 C9P02748 559 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 CHRNB1P11230 501 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 POLR2CP19387 275 aaPredicted RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 DDCP20711 480 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 CXCR2P25025 360 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 ACVR2AP27037 513 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 CERS1P27544 350 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 DUSP2Q05923 314 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 ZNF846Q147U1 533 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 PRRT3Q5FWE3 981 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 RPS26P11Q5JNZ5 115 aaPredicted RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 NDUFAF5Q5TEU4 345 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 FAHD1Q6P587 224 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 ZNF438Q7Z4V0 828 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 RAB42Q8N4Z0 105 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 RAB8BQ92930 207 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 CXorf40BQ96DE9 158 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 PCBD2Q9H0N5 130 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 MVB12BQ9H7P6 319 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 HMG20AQ9NP66 347 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 NECTIN3Q9NQS3 549 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 ATAD3AQ9NVI7 634 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 THUMPD1Q9NXG2 353 aaKnown RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 ZNF282Q9UDV7 671 aaPredicted RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 FBXW2Q9UKT8 454 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 ZNF451Q9Y4E5 1061 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 ATG4BQ9Y4P1 393 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 A6NCN8 305 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 PGRMC2O15173 223 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 RGS10O43665 173 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 OPRL1P41146 370 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 MAD2L1BPQ15013 274 aaPredicted RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 SYT6Q5T7P8 510 aaPredicted RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 C18orf63Q68DL7 685 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 OR4C11Q6IEV9 310 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 NUDT13Q86X67 352 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 ZNF540Q8NDQ6 660 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 SH3YL1Q96HL8 342 aaPredicted RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 PHF7Q9BWX1 381 aaPredicted RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 RSPO3Q9BXY4 272 aaPredicted RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 SRMSQ9H3Y6 488 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 KIR3DX1Q9H7L2 352 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 PRDM6Q9NQX0 595 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 ADPRHL2Q9NX46 363 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 USP36Q9P275 1121 aaKnown RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 AASSQ9UDR5 926 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 APOBEC3BQ9UH17 382 aaKnown RBP13.69□□□□□ -0.22
CHD3-211ENST00000481999 LRP4O75096 1905 aa13.69□□□□□ -0.22
CHD3-211ENST00000481999 PRAMEF25A6NGN4 478 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 TNFRSF21O75509 655 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 CD6P30203 668 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 ST13P50502 369 aaKnown RBP13.68□□□□□ -0.22
CHD3-211ENST00000481999 MANFP55145 182 aaKnown RBP13.68□□□□□ -0.22
CHD3-211ENST00000481999 LRRC74AQ0VAA2 488 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 IGFN1Q86VF2 1251 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 P2RY8Q86VZ1 359 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 TMEFF1Q8IYR6 380 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 TMCO5AQ8N6Q1 288 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 MS4A6EQ96DS6 147 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 EPYCQ99645 322 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 PITX2Q99697 317 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 TSC22D4Q9Y3Q8 395 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 A0A0A6YYD5 115 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 GSAPA4D1B5 854 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 M0R3G1 203 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 SUV39H1O43463 412 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 CTSVO60911 334 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 FAM20BO75063 409 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 ERAL1O75616 437 aaKnown RBP13.68□□□□□ -0.22
CHD3-211ENST00000481999 F3P13726 295 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 IL9P15248 144 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 MAP2K4P45985 399 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 ITGADQ13349 1161 aa13.68□□□□□ -0.22
CHD3-211ENST00000481999 PROX2Q3B8N5 592 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms