RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 SLC22A9Q8IVM8 553 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 SAMD14Q8IZD0 417 aaPredicted RBP10.62□□□□□ -0.71
CCM2-213ENST00000480658 SHISA5Q8N114 240 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 FAM109AQ8N4B1 249 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 EIF1ADQ8N9N8 165 aaKnown RBP10.62□□□□□ -0.71
CCM2-213ENST00000480658 C17orf47Q8NEP4 570 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 FAM57AQ8TBR7 257 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 ZNF721Q8TF20 911 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.62□□□□□ -0.715e-8■■■■■ 65.3
CCM2-213ENST00000480658 MARVELD3Q96A59 401 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 SENP5Q96HI0 755 aaPredicted RBP10.62□□□□□ -0.71
CCM2-213ENST00000480658 FAIM2Q9BWQ8 316 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 IL1RL2Q9HB29 575 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 PLSCR2Q9NRY7 297 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 QPCTLQ9NXS2 382 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 TINAGQ9UJW2 476 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 ZNF223Q9UK11 482 aaPredicted RBP10.62□□□□□ -0.71
CCM2-213ENST00000480658 PCTPQ9UKL6 214 aa10.62□□□□□ -0.71
CCM2-213ENST00000480658 BOKQ9UMX3 212 aaPredicted RBP10.62□□□□□ -0.71
CCM2-213ENST00000480658 C1orf226A1L170 272 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 TRIM49D1C9J1S8 452 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 POC1B-GALNT4F8VUJ3 575 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 TGFBR3LH3BV60 316 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 WWP2O00308 870 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 SAP18O00422 153 aaKnown RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 RTCAO00442 366 aaKnown RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 TP53I11O14683 189 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 IGKV3-11P04433 115 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 GSTA1P08263 222 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 RPS17P08708 135 aaKnown RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 HOXD4P09016 255 aaPredicted RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 COX6B1P14854 86 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 CNR1P21554 472 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 HTR1EP28566 365 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 SOX3P41225 446 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 TRA2BP62995 288 aaKnown RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 HERVK_113P63132 956 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 RASA2Q15283 850 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 SF3B4Q15427 424 aaKnown RBP eCLIP10.61□□□□□ -0.71
CCM2-213ENST00000480658 C3AR1Q16581 482 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 HYAL4Q2M3T9 481 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 HLA-DQA1Q5Y7H0 255 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 MRM1Q6IN84 353 aaKnown RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 IL20RBQ6UXL0 311 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 TIFABQ6ZNK6 161 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 FAM47EQ6ZV65 393 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 ZNF227Q86WZ6 799 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 GALNT12Q8IXK2 581 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 NOA1Q8NC60 698 aaKnown RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 OR2M7Q8NG81 312 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 OR7G1Q8NGA0 311 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 AGAP11Q8TF27 550 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 CA5BP1Q8WTZ4 195 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 ASB5Q8WWX0 329 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 TP53INP1Q96A56 240 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 ANKRD9Q96BM1 317 aaPredicted RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 SPACA9Q96E40 222 aaPredicted RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 PHF21BQ96EK2 531 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 SECISBP2Q96T21 854 aaKnown RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 CNPPD1Q9BV87 410 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 ERVK-6Q9BXR3 956 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 ZDHHC11Q9H8X9 412 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 PSMC3IPQ9P2W1 217 aaPredicted RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 TRPS1Q9UHF7 1281 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 DMGDHQ9UI17 866 aaKnown RBP10.61□□□□□ -0.71
CCM2-213ENST00000480658 SH3BGRL2Q9UJC5 107 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 ATG4BQ9Y4P1 393 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 PCDHGB3Q9Y5G1 929 aa10.61□□□□□ -0.71
CCM2-213ENST00000480658 TMEM200CA6NKL6 621 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 OR7A17O14581 309 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 HS6ST1O60243 411 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 SUSD5O60279 629 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 CDC40O60508 579 aaKnown RBP eCLIP10.6□□□□□ -0.71
CCM2-213ENST00000480658 HCN1O60741 890 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 OR6B1O95007 311 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 SIX3O95343 332 aaPredicted RBP10.6□□□□□ -0.71
CCM2-213ENST00000480658 TPOP07202 933 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 ECHS1P30084 290 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 BSGP35613 385 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 MAPK12P53778 367 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 PPIAP62937 165 aaKnown RBP10.6□□□□□ -0.71
CCM2-213ENST00000480658 CSTF3Q12996 717 aaKnown RBP10.6□□□□□ -0.71
CCM2-213ENST00000480658 PIGGQ5H8A4 983 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 CCNYL2Q5T2Q4 361 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 SLC22A10Q63ZE4 541 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 SP5Q6BEB4 398 aaPredicted RBP10.6□□□□□ -0.71
CCM2-213ENST00000480658 MDGA2Q7Z553 956 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 GBP7Q8N8V2 638 aaPredicted RBP10.6□□□□□ -0.71
CCM2-213ENST00000480658 OR4K14Q8NGD5 310 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 OR52B6Q8NGF0 335 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 DCAKDQ8WVC6 231 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 SARAFQ96BY9 339 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 ZNF717Q9BY31 904 aaPredicted RBP10.6□□□□□ -0.71
CCM2-213ENST00000480658 TTTY12Q9BZ98 90 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 TSPAN10Q9H1Z9 355 aaPredicted RBP10.6□□□□□ -0.71
CCM2-213ENST00000480658 RNF11Q9Y3C5 154 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 ASB4Q9Y574 426 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 NAV2Q8IVL1 2488 aa10.6□□□□□ -0.71
CCM2-213ENST00000480658 UTP20O75691 2785 aaKnown RBP10.59□□□□□ -0.71
CCM2-213ENST00000480658 ANKRD33BA6NCL7 494 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms