RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 MAPKAP1Q9BPZ7 522 aa20.24■□□□□ 0.83
SDF4-206ENST00000478938 ENAMQ9NRM1 1142 aa20.24■□□□□ 0.83
SDF4-206ENST00000478938 SOX14O95416 240 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 CPSF4O95639 269 aaKnown RBP20.23■□□□□ 0.83
SDF4-206ENST00000478938 GPX2P18283 190 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 BTF3P20290 206 aaKnown RBP20.23■□□□□ 0.83
SDF4-206ENST00000478938 PTBP1P26599 531 aaKnown RBP eCLIP20.23■□□□□ 0.83
SDF4-206ENST00000478938 SERTAD2Q14140 314 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 GANABQ14697 944 aaKnown RBP20.23■□□□□ 0.83
SDF4-206ENST00000478938 FBXO47Q5MNV8 452 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 PRAMEF19Q5SWL8 479 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 FAM9CQ8IZT9 166 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 ZNF687Q8N1G0 1237 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 LRRC52Q8N7C0 313 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 ZNF527Q8NB42 609 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 CNOT9Q92600 299 aaKnown RBP20.23■□□□□ 0.83
SDF4-206ENST00000478938 DPAGT1Q9H3H5 408 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 OR6C2Q9NZP2 312 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 ZNF214Q9UL59 606 aaPredicted RBP20.23■□□□□ 0.83
SDF4-206ENST00000478938 CLCA2Q9UQC9 943 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 COL11A1P12107 1806 aaPredicted RBP20.23■□□□□ 0.83
SDF4-206ENST00000478938 PRAMEF25A6NGN4 478 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 CASC3O15234 703 aaKnown RBP20.23■□□□□ 0.83
SDF4-206ENST00000478938 PEX11BO96011 259 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 GIFP27352 417 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 PCBP2Q15366 365 aaKnown RBP eCLIP20.23■□□□□ 0.835e-11■■■■□ 24.9
SDF4-206ENST00000478938 ZSWIM7Q19AV6 140 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 FAM26DQ5JW98 314 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 SYNPOQ8N3V7 929 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 CD200R1Q8TD46 325 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 UROC1Q96N76 676 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 NUDT4Q9NZJ9 180 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 TMEM5Q9Y2B1 443 aa20.23■□□□□ 0.83
SDF4-206ENST00000478938 TRBV23-1A0A0A0MS06 115 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 RRN3P2A6NIE6 340 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 ATG12O94817 140 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 GASTP01350 101 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 CCR6P51684 374 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 FGL2Q14314 439 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 INSL4Q14641 139 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 TMEM132BQ14DG7 1078 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 HFEQ30201 348 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 SLC16A13Q7RTY0 426 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 HSD17B13Q7Z5P4 300 aaPredicted RBP20.22■□□□□ 0.83
SDF4-206ENST00000478938 PLA2G15Q8NCC3 412 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 REPS2Q8NFH8 660 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 C12orf66Q96MD2 445 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 TMEM30AQ9NV96 361 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 NDRG3Q9UGV2 375 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 SF3B6Q9Y3B4 125 aaKnown RBP20.22■□□□□ 0.83
SDF4-206ENST00000478938 ATP5A1P25705 553 aaKnown RBP20.22■□□□□ 0.83
SDF4-206ENST00000478938 VIPR1P32241 457 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 GSG1Q2KHT4 349 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 RNASE12Q5GAN4 147 aaKnown RBP20.22■□□□□ 0.83
SDF4-206ENST00000478938 MFSD14CQ5VZR4 134 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 CLECL1Q8IZS7 167 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 STK40Q8N2I9 435 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 NKX6-2Q9C056 277 aaPredicted RBP20.22■□□□□ 0.83
SDF4-206ENST00000478938 SPRTNQ9H040 489 aaPredicted RBP20.22■□□□□ 0.83
SDF4-206ENST00000478938 OSER1Q9NX31 292 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 RHCGQ9UBD6 479 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 FNDC3AQ9Y2H6 1198 aaKnown RBP20.22■□□□□ 0.83
SDF4-206ENST00000478938 NUBP2Q9Y5Y2 271 aa20.22■□□□□ 0.83
SDF4-206ENST00000478938 IQCF5A8MTL0 148 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 MAGEB17A8MXT2 336 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 GCM2O75603 506 aaPredicted RBP20.21■□□□□ 0.83
SDF4-206ENST00000478938 RAB3BP20337 219 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 MMP12P39900 470 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 MAPKAPK2P49137 400 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 TEX47Q8TBZ9 253 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 GATAD2BQ8WXI9 593 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 CDKN2AIPNLQ96HQ2 116 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 COPS8Q99627 209 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 TREX2Q9BQ50 279 aaPredicted RBP20.21■□□□□ 0.83
SDF4-206ENST00000478938 GOLGA2P5Q9HBQ8 144 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 ELOVL2Q9NXB9 296 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 ASIC5Q9NY37 505 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 GSTK1Q9Y2Q3 226 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 KCNK7Q9Y2U2 307 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 TRABD2BA6NFA1 517 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 UPK3BL1B0FP48 263 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 CHURC1-FNTBB4DL54 471 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 UPK3BL2E5RIL1 263 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 L7N2F9 121 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 MANBAO00462 879 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 EIF3GO75821 320 aaKnown RBP eCLIP20.21■□□□□ 0.83
SDF4-206ENST00000478938 ECDO95905 644 aaPredicted RBP20.21■□□□□ 0.83
SDF4-206ENST00000478938 HPXP02790 462 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 HIST1H2AGP0C0S8 130 aaPredicted RBP20.21■□□□□ 0.83
SDF4-206ENST00000478938 HIST1H2ADP20671 130 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 CASP9P55211 416 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 PURAQ00577 322 aaKnown RBP20.21■□□□□ 0.83
SDF4-206ENST00000478938 DUOXA1Q1HG43 343 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 SWI5Q1ZZU3 235 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 VASNQ6EMK4 673 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 HIST2H2AA3Q6FI13 130 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 LYPD4Q6UWN0 246 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 CEACAM20Q6UY09 585 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 ZER1Q7Z7L7 766 aa20.21■□□□□ 0.83
SDF4-206ENST00000478938 GTF3C2Q8WUA4 911 aaPredicted RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms