RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PKP4Q99569 1192 aa7.24□□□□□ -1.25
USP54-211ENST00000474929 APOL2Q9BQE5 337 aa7.24□□□□□ -1.25
USP54-211ENST00000474929 PRR14Q9BWN1 585 aa7.24□□□□□ -1.25
USP54-211ENST00000474929 NPLQ9BXD5 320 aaPredicted RBP7.24□□□□□ -1.25
USP54-211ENST00000474929 KRTAP17-1Q9BYP8 105 aa7.24□□□□□ -1.25
USP54-211ENST00000474929 TRIM2Q9C040 744 aa7.24□□□□□ -1.25
USP54-211ENST00000474929 FN3KRPQ9HA64 309 aa7.24□□□□□ -1.25
USP54-211ENST00000474929 PROK2Q9HC23 129 aa7.24□□□□□ -1.25
USP54-211ENST00000474929 CISD1Q9NZ45 108 aaKnown RBP7.24□□□□□ -1.25
USP54-211ENST00000474929 EMC9Q9Y3B6 208 aa7.24□□□□□ -1.25
USP54-211ENST00000474929 CADP27708 2225 aa7.24□□□□□ -1.25
USP54-211ENST00000474929 ESYT3A0FGR9 886 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 KRT87PA6NCN2 255 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 VWC2LB2RUY7 222 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 H3BMM5 538 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 CDC7O00311 574 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 NRDCO43847 1150 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 PROSCO94903 275 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 CGAP01215 116 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 CD8AP01732 235 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 RHOXF2BP0C7M4 288 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 ZNF888P0CJ79 500 aaPredicted RBP7.23□□□□□ -1.25
USP54-211ENST00000474929 HKR1P10072 659 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 PSMB1P20618 241 aaKnown RBP7.23□□□□□ -1.25
USP54-211ENST00000474929 CTNNA2P26232 953 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 MSH2P43246 934 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 KIR2DL2P43627 348 aaPredicted RBP7.23□□□□□ -1.25
USP54-211ENST00000474929 DVL1P1P54792 670 aaPredicted RBP7.23□□□□□ -1.25
USP54-211ENST00000474929 CDH11P55287 796 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 DYNLT1P63172 113 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 IRX1P78414 480 aaPredicted RBP7.23□□□□□ -1.25
USP54-211ENST00000474929 IL13RA1P78552 427 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 CCZ1BP86790 482 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 CCZ1P86791 482 aaPredicted RBP7.23□□□□□ -1.25
USP54-211ENST00000474929 EFTUD2Q15029 972 aaKnown RBP eCLIP7.23□□□□□ -1.25
USP54-211ENST00000474929 EXOC3L2Q2M3D2 409 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 IQCCQ4KMZ1 466 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 FASTKD1Q53R41 847 aaKnown RBP7.23□□□□□ -1.25
USP54-211ENST00000474929 HSP90AA4PQ58FG1 418 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 VAX1Q5SQQ9 334 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 CASC4Q6P4E1 433 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 STAC2Q6ZMT1 411 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 RINLQ6ZS11 566 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 C22orf34Q6ZV56 151 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 REC114Q7Z4M0 266 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 IRF2BP2Q7Z5L9 587 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 TAGAPQ8N103 731 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 LINC01356Q8N9X3 169 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 ADCY4Q8NFM4 1077 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 OR6K3Q8NGY3 331 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 OR14L1PQ8NHC6 308 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 NT5CQ8TCD5 201 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 LKAAEAR1Q8TD35 194 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 ZNF480Q8WV37 535 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 ATL1Q8WXF7 558 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 P3H4Q92791 437 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 CTHRC1Q96CG8 243 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 QKIQ96PU8 341 aaKnown RBP eCLIP7.23□□□□□ -1.25
USP54-211ENST00000474929 MACROD1Q9BQ69 325 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 HDHD5Q9BXW7 423 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 RHBGQ9H310 441 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 ACTR8Q9H981 624 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 ZMAT3Q9HA38 289 aaKnown RBP7.23□□□□□ -1.25
USP54-211ENST00000474929 ABCF3Q9NUQ8 709 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 USP22Q9UPT9 525 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 ZNF175Q9Y473 711 aa7.23□□□□□ -1.25
USP54-211ENST00000474929 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.23□□□□□ -1.25
USP54-211ENST00000474929 LOC390937A0A1W2PQ73 354 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 IQCF5A8MTL0 148 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 C17orf105B2RV13 164 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 SMAD9O15198 467 aaKnown RBP7.22□□□□□ -1.25
USP54-211ENST00000474929 GAS8O95995 478 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 ZNF708P17019 499 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 TNNI3P19429 210 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 GCH1P30793 250 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 HPDP32754 393 aaPredicted RBP7.22□□□□□ -1.25
USP54-211ENST00000474929 COILP38432 576 aaPredicted RBP7.22□□□□□ -1.25
USP54-211ENST00000474929 RAB38P57729 211 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 STX4Q12846 297 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 BCL2A1Q16548 175 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 TIGD3Q6B0B8 471 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 C11orf71Q6IPW1 123 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 FAM214BQ7L5A3 538 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 SLC29A4Q7RTT9 530 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 EXOC3L1Q86VI1 746 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 KRT222Q8N1A0 295 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 FBXL14Q8N1E6 418 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 CA13Q8N1Q1 262 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 MPP5Q8N3R9 675 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 SNX31Q8N9S9 440 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 ZNF610Q8N9Z0 462 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 TRPV3Q8NET8 790 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 KBTBD8Q8NFY9 601 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 OR1J4Q8NGS1 313 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 PEX13Q92968 403 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 FAR2Q96K12 515 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 CCDC138Q96M89 665 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 GNRHR2Q96P88 292 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 G6PC3Q9BUM1 346 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 OR2B2Q9GZK3 357 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms