RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 PPWD1Q96BP3 646 aaKnown RBP18.25■□□□□ 0.51
COL9A3-210ENST00000472880 PELOQ9BRX2 385 aaKnown RBP18.25■□□□□ 0.51
COL9A3-210ENST00000472880 UCK2Q9BZX2 261 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 LDAHQ9H6V9 325 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 EXO5Q9H790 373 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 NPDC1Q9NQX5 325 aaPredicted RBP18.25■□□□□ 0.51
COL9A3-210ENST00000472880 TSC22D4Q9Y3Q8 395 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 ATP6AP2A0A1C7CYW4 349 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 CCDC189A1A4V9 331 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 AQP7O14520 342 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 OR10H2O60403 315 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 PRKRAO75569 313 aaKnown RBP18.24■□□□□ 0.51
COL9A3-210ENST00000472880 ATP6AP2O75787 350 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 IGFBP2P18065 325 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 MSX1P28360 303 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 PIGAP37287 484 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 MAN2A2P49641 1150 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 ARFIP1P53367 373 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 RPS13P62277 151 aaKnown RBP18.24■□□□□ 0.51
COL9A3-210ENST00000472880 KCNJ2P63252 427 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 TFF3Q07654 80 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 FOXO1Q12778 655 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 PFKFB4Q16877 469 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 HYAL4Q2M3T9 481 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 ZNF791Q3KP31 576 aaPredicted RBP18.24■□□□□ 0.51
COL9A3-210ENST00000472880 MROH9Q5TGP6 573 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 SLC22A10Q63ZE4 541 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 KLC3Q6P597 504 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 DGAT2L6Q6ZPD8 337 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 SLC29A4Q7RTT9 530 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 ZNF572Q7Z3I7 529 aaPredicted RBP18.24■□□□□ 0.51
COL9A3-210ENST00000472880 ST13P4Q8IZP2 240 aaPredicted RBP18.24■□□□□ 0.51
COL9A3-210ENST00000472880 OR10Q1Q8NGQ4 319 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 MRRFQ96E11 262 aaKnown RBP18.24■□□□□ 0.51
COL9A3-210ENST00000472880 SPACA9Q96E40 222 aaPredicted RBP18.24■□□□□ 0.51
COL9A3-210ENST00000472880 GAL3ST4Q96RP7 486 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 SNX15Q9NRS6 342 aa18.24■□□□□ 0.51
COL9A3-210ENST00000472880 LYARQ9NX58 379 aaKnown RBP18.24■□□□□ 0.51
COL9A3-210ENST00000472880 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.24■□□□□ 0.51
COL9A3-210ENST00000472880 PHF3Q92576 2039 aaKnown RBP18.23■□□□□ 0.51
COL9A3-210ENST00000472880 ZNF407Q9C0G0 2248 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 IQANK1A0A1B0GTG1 560 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 A0A1B0GVC2 190 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 HRKO00198 91 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 SUSD5O60279 629 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 UGDHO60701 494 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 TOXO94900 526 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 C2P06681 752 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 CELA3AP09093 270 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 NR2F6P10588 404 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 PTX3P26022 381 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-210ENST00000472880 PIK3CGP48736 1102 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 ALDH18A1P54886 795 aaKnown RBP18.23■□□□□ 0.51
COL9A3-210ENST00000472880 HERVK_113P63132 956 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 ERVK-8P63133 956 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 TBL3Q12788 808 aaKnown RBP18.23■□□□□ 0.51
COL9A3-210ENST00000472880 SLC10A1Q14973 349 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 ACAP2Q15057 778 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 TRADDQ15628 312 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 UAP1Q16222 522 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-210ENST00000472880 CYP20A1Q6UW02 462 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 B3GNT6Q6ZMB0 384 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 RNF111Q6ZNA4 994 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 DND1Q8IYX4 353 aaKnown RBP18.23■□□□□ 0.51
COL9A3-210ENST00000472880 SLC15A4Q8N697 577 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 FAM13CQ8NE31 585 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 SARAFQ96BY9 339 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 ERVK-6Q9BXR3 956 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 WDR41Q9HAD4 459 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 TNFRSF10DQ9UBN6 386 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 ACAD8Q9UKU7 415 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 BOKQ9UMX3 212 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-210ENST00000472880 ERVK-19Q9WJR5 959 aa18.23■□□□□ 0.51
COL9A3-210ENST00000472880 H0YIV9 168 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 PROM1O43490 865 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 WDR1O75083 606 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 NADKO95544 446 aaPredicted RBP18.22■□□□□ 0.51
COL9A3-210ENST00000472880 GTF2H2Q13888 395 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 ZNF267Q14586 743 aaPredicted RBP18.22■□□□□ 0.51
COL9A3-210ENST00000472880 CPSF6Q16630 551 aaKnown RBP eCLIP18.22■□□□□ 0.51
COL9A3-210ENST00000472880 SPRED3Q2MJR0 410 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 WLSQ5T9L3 541 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 PRAMEF20Q5VT98 475 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 GTF2H2CQ6P1K8 395 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 GOLGA7Q7Z5G4 137 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 FBXW8Q8N3Y1 598 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 DOK4Q8TEW6 326 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 PAQR8Q8TEZ7 354 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 TTYH2Q9BSA4 534 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 ZNF703Q9H7S9 590 aaPredicted RBP18.22■□□□□ 0.51
COL9A3-210ENST00000472880 IPPKQ9H8X2 491 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 SH2D2AQ9NP31 389 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 SEMA4BQ9NPR2 832 aaPredicted RBP18.22■□□□□ 0.51
COL9A3-210ENST00000472880 CPSF2Q9P2I0 782 aaKnown RBP18.22■□□□□ 0.51
COL9A3-210ENST00000472880 TNPO3Q9Y5L0 923 aaKnown RBP18.22■□□□□ 0.51
COL9A3-210ENST00000472880 EML6Q6ZMW3 1958 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 HCFC1P51610 2035 aa18.22■□□□□ 0.51
COL9A3-210ENST00000472880 A0A096LPK6 155 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 A0A0A6YYD5 115 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 TRGV5A0A0B4J1U4 118 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms