RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MKL2Q9ULH7 1088 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 VPS13CQ709C8 3753 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 IGHV1-45A0A0A0MS14 117 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 WDR91A4D1P6 747 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 SAP18O00422 153 aaKnown RBP11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 RTCAO00442 366 aaKnown RBP11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 PLPP1O14494 284 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 CHST10O43529 356 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 SLC19A2O60779 497 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 DNAJB6O75190 326 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 ULK1O75385 1050 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 SEMA3DO95025 777 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 SCELO95171 688 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 ETHE1O95571 254 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 CRYABP02511 175 aaKnown RBP11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 SERPINA7P05543 415 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 CHRNGP07510 517 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 PRR35P0CG20 571 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 COX6A1P12074 109 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 HSD3B1P14060 373 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 HIST1H1TP22492 207 aaPredicted RBP11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 HSD3B2P26439 372 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 MST1P26927 711 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 CERS1P27544 350 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 SSR2P43308 183 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 FOXA1P55317 472 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 FOXD4Q12950 439 aaPredicted RBP11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 CSTF3Q12996 717 aaKnown RBP11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 CHI3L2Q15782 390 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 C3AR1Q16581 482 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 ARL13AQ5H913 290 aaPredicted RBP11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 HHATQ5VTY9 493 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 OR4C11Q6IEV9 310 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 ZNF793Q6ZN11 406 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 SHISA5Q8N114 240 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 CA13Q8N1Q1 262 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 PPP1R14CQ8TAE6 165 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 METTL21AQ8WXB1 218 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 PSMF1Q92530 271 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 PEX11GQ96HA9 241 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 MESP1Q9BRJ9 268 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 SHCBP1LQ9BZQ2 653 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 ZNF700Q9H0M5 742 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 EML4Q9HC35 981 aaKnown RBP11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 TNFRSF12AQ9NP84 129 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 ZNF446Q9NWS9 450 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 NKIRAS1Q9NYS0 192 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 TIMM22Q9Y584 194 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 CPAMD8Q8IZJ3 1885 aa11.14□□□□□ -0.63
SQSTM1-206ENST00000466342 INTS1Q8N201 2190 aaKnown RBP11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 TRAV17A0A0B4J275 112 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 SERTM1A2A2V5 107 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 HMGB1P1B2RPK0 211 aaPredicted RBP11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 CRCPO75575 148 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 SERPINE1P05121 402 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 UROSP10746 265 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 RNH1P13489 461 aaKnown RBP11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 JAK1P23458 1154 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 ATP5A1P25705 553 aaKnown RBP11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 HTR6P50406 440 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 TNFSF10P50591 281 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 WDR4P57081 412 aaKnown RBP11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 RAB38P57729 211 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 ARG2P78540 354 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 SRSF11Q05519 484 aaKnown RBP11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 RUNX2Q13950 521 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 ABRAXAS2Q15018 415 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 AP5B1Q2VPB7 878 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 HOMEZQ8IX15 550 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 ZCCHC7Q8N3Z6 543 aaKnown RBP11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 ACOT4Q8N9L9 421 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 TBC1D20Q96BZ9 403 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 IMMP1LQ96LU5 166 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 HBEGFQ99075 208 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 PAIP2Q9BPZ3 127 aaKnown RBP11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 TUBB6Q9BUF5 446 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 SORBS1Q9BX66 1292 aaKnown RBP11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 ZNF717Q9BY31 904 aaPredicted RBP11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 RBCK1Q9BYM8 510 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 TINAGQ9UJW2 476 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 DAPP1Q9UN19 280 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 SLC12A4Q9UP95 1085 aa11.13□□□□□ -0.63
SQSTM1-206ENST00000466342 FLNAP21333 2647 aaKnown RBP11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 DYTNA2CJ06 578 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 TMEM114B3SHH9 223 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 PSMD12O00232 456 aaPredicted RBP11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 AZIN1O14977 448 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 RASAL1O95294 804 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 FHP07954 510 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 FGF4P08620 206 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 C8orf89P0DMQ9 161 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 NEFHP12036 1026 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 GRK2P25098 689 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 ARRB2P32121 409 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 BSGP35613 385 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 SOX11P35716 441 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 EFNA3P52797 238 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 LIM2P55344 173 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 EEF1A2Q05639 463 aaKnown RBP11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 PCOLCEQ15113 449 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms