RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 WDR41Q9HAD4 459 aa3.4□□□□□ -1.87
CLK1-208ENST00000464454 HOMER3Q9NSC5 361 aa3.4□□□□□ -1.87
CLK1-208ENST00000464454 ERVK-18Q9QC07 812 aa3.4□□□□□ -1.87
CLK1-208ENST00000464454 COPS7AQ9UBW8 275 aa3.4□□□□□ -1.87
CLK1-208ENST00000464454 FAM153AQ9UHL3 310 aa3.4□□□□□ -1.87
CLK1-208ENST00000464454 DNPEPQ9ULA0 475 aa3.4□□□□□ -1.87
CLK1-208ENST00000464454 ODF2LQ9ULJ1 636 aa3.4□□□□□ -1.87
CLK1-208ENST00000464454 COL2A1P02458 1487 aaPredicted RBP3.4□□□□□ -1.87
CLK1-208ENST00000464454 RPGRIP1LQ68CZ1 1315 aa3.4□□□□□ -1.87
CLK1-208ENST00000464454 SH3PXD2BA1X283 911 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 ARHGAP42A6NI28 874 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 ARHGEF33A8MVX0 844 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 NEDD8-MDP1E9PL57 170 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 SNAP91O60641 907 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 CRLF1O75462 422 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 PGK2P07205 417 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 FHP07954 510 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 HIST1H2AGP0C0S8 130 aaPredicted RBP3.39□□□□□ -1.87
CLK1-208ENST00000464454 MBL2P11226 248 aaPredicted RBP3.39□□□□□ -1.87
CLK1-208ENST00000464454 GAP43P17677 238 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 IL10P22301 178 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 ACP1P24666 158 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 CAPGP40121 348 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 ACADSBP45954 432 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 LIMK2P53671 638 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 RPL27P61353 136 aaKnown RBP3.39□□□□□ -1.87
CLK1-208ENST00000464454 FKBP3Q00688 224 aaKnown RBP3.39□□□□□ -1.87
CLK1-208ENST00000464454 MS4A2Q01362 244 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 RAPSNQ13702 412 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 LY6DQ14210 128 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 GAMTQ14353 236 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 SLC17A1Q14916 467 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 ZNF146Q15072 292 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 PKN2Q16513 984 aaKnown RBP3.39□□□□□ -1.87
CLK1-208ENST00000464454 CARTPTQ16568 116 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 ECSCRQ19T08 205 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 CCDC40Q4G0X9 1142 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 GLIPR1L2Q4G1C9 344 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 GPAT3Q53EU6 434 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 PARP10Q53GL7 1025 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 NEPROQ6NW34 567 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 NEK5Q6P3R8 708 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 MFSD7Q6UXD7 560 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 Q6ZRG5 221 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 CDHR3Q6ZTQ4 885 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 MCM10Q7L590 875 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 TAF8Q7Z7C8 310 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 KCNMB4Q86W47 210 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 FAM131BQ86XD5 332 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.39□□□□□ -1.87
CLK1-208ENST00000464454 WDR49Q8IV35 697 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 OR52E1Q8NGJ3 308 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 FAM222BQ8WU58 562 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 HIST1H2ACQ93077 130 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 MRPL24Q96A35 216 aaKnown RBP3.39□□□□□ -1.87
CLK1-208ENST00000464454 ESAMQ96AP7 390 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 ANKRD9Q96BM1 317 aaPredicted RBP3.39□□□□□ -1.87
CLK1-208ENST00000464454 NSMCE2Q96MF7 247 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 RUNDC3BQ96NL0 473 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 ANKRD27Q96NW4 1050 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 ZNF577Q9BSK1 485 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 STRADBQ9C0K7 418 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 CXXC4Q9H2H0 198 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.39□□□□□ -1.87
CLK1-208ENST00000464454 THYN1Q9P016 225 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 THAP10Q9P2Z0 257 aaPredicted RBP3.39□□□□□ -1.87
CLK1-208ENST00000464454 MUTYHQ9UIF7 546 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 DIMT1Q9UNQ2 313 aaKnown RBP3.39□□□□□ -1.87
CLK1-208ENST00000464454 NIP7Q9Y221 180 aaKnown RBP eCLIP3.39□□□□□ -1.87
CLK1-208ENST00000464454 KIF7Q2M1P5 1343 aa3.39□□□□□ -1.87
CLK1-208ENST00000464454 IGHV3OR16-10A0A075B7F0 116 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 BICDL2A1A5D9 508 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 CFAP73A6NFT4 308 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 IGLON5A6NGN9 336 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 ERI2A8K979 691 aaKnown RBP3.38□□□□□ -1.87
CLK1-208ENST00000464454 PDHXO00330 501 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 FBP2O00757 339 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 ZNF749O43361 778 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 ANXA9O76027 345 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 REC8O95072 547 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 SFNP31947 248 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 ID1P41134 155 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 PEX3P56589 373 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 RPS27AP62979 156 aaKnown RBP3.38□□□□□ -1.87
CLK1-208ENST00000464454 SRPXP78539 464 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 FASTKQ14296 549 aaKnown RBP3.38□□□□□ -1.87
CLK1-208ENST00000464454 EXOSC7Q15024 291 aaKnown RBP3.38□□□□□ -1.87
CLK1-208ENST00000464454 P2RY14Q15391 338 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 CCDC92Q53HC0 331 aaPredicted RBP3.38□□□□□ -1.87
CLK1-208ENST00000464454 TOR1AIP1Q5JTV8 583 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 TEX35Q5T0J7 233 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 CDC42EP5Q6NZY7 148 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 PAQR6Q6TCH4 344 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 ZSCAN30Q86W11 494 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 CARM1Q86X55 608 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 PARP8Q8N3A8 854 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 HDDC3Q8N4P3 179 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 BANPQ8N9N5 519 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 ICA1LQ8NDH6 482 aa3.38□□□□□ -1.87
CLK1-208ENST00000464454 NPRL2Q8WTW4 380 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms