RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	DMRT3	Q9NQL9	472 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	QPCTL	Q9NXS2	382 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	WWOX	Q9NZC7	414 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	PLEKHA6	Q9Y2H5	1048 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	CLGN	O14967	610 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	PHGDH	O43175	533 aa	Known RBP	10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	MSH2	P43246	934 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	KIR2DL3	P43628	341 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZNF136	P52737	540 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	HNRNPH2	P55795	449 aa	Known RBP	10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	SLC37A1	P57057	533 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	GNG11	P61952	73 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	ETF1	P62495	437 aa	Known RBP	10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	PPP2R2A	P63151	447 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	POU4F1	Q01851	419 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	DLG1	Q12959	904 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	CHIT1	Q13231	466 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	DAZAP2	Q15038	168 aa	Predicted RBP	10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	EBP	Q15125	230 aa	Known RBP	10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	NTRK2	Q16620	822 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	SPRED3	Q2MJR0	410 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	FLYWCH1	Q4VC44	716 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	TMEM35A	Q53FP2	167 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	FNDC7	Q5VTL7	733 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	SLC22A10	Q63ZE4	541 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	C18orf63	Q68DL7	685 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	SULT1C3	Q6IMI6	304 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	PAMR1	Q6UXH9	720 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	SLC15A4	Q8N697	577 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	TNIP2	Q8NFZ5	429 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	GPR22	Q99680	433 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	ROGDI	Q9GZN7	287 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	PRDM14	Q9GZV8	571 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	IKBKG	Q9Y6K9	419 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815	MPDZ	O75970	2070 aa		10.25	□□□□□ -0.77
PTPN7-204	ENST00000462815		A0A1W2PPR1	153 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	WASHC1	A8K0Z3	465 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	HSPB2	A8KAH6	182 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	FAM47E-STBD1	D6RA91	191 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	SAP18	O00422	153 aa	Known RBP	10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	PLPP1	O14494	284 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	LRAT	O95237	230 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	ATE1	O95260	518 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	EPPIN	O95925	133 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	TGFB1	P01137	390 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	CCDC166	P0CW27	439 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	FOSL1	P15407	271 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	TNNI3	P19429	210 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	CPN2	P22792	545 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	TIMP3	P35625	211 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	ASCL1	P50553	236 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	ARL4C	P56559	192 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	TNFRSF17	Q02223	184 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	TGM3	Q08188	693 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	PDIA2	Q13087	525 aa	Known RBP	10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	LAPTM5	Q13571	262 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	HSPB2	Q16082	182 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	DEPDC1	Q5TB30	811 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	KHDRBS2	Q5VWX1	349 aa	Known RBP	10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	MRM1	Q6IN84	353 aa	Known RBP	10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	SYDE1	Q6ZW31	735 aa	Predicted RBP	10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	LRRC70	Q7Z2Q7	622 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	GPSM1	Q86YR5	675 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	CREG2	Q8IUH2	290 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	SNX31	Q8N9S9	440 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	SRFBP1	Q8NEF9	429 aa	Known RBP	10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	OR7G3	Q8NG95	312 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	SLC22A8	Q8TCC7	542 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	DOK4	Q8TEW6	326 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	FAM222B	Q8WU58	562 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	UBTD2	Q8WUN7	234 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	RNASE6	Q93091	150 aa	Known RBP	10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	RMND5B	Q96G75	393 aa	Predicted RBP	10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	RUNDC3B	Q96NL0	473 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	ATOH8	Q96SQ7	321 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	TIMP4	Q99727	224 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	CD244	Q9BZW8	370 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	WWTR1	Q9GZV5	400 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	OR51B5	Q9H339	312 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	LDAH	Q9H6V9	325 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	PLEKHF2	Q9H8W4	249 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	CNOT10	Q9H9A5	744 aa	Known RBP	10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	JKAMP	Q9P055	326 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	COPS7A	Q9UBW8	275 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	BOK	Q9UMX3	212 aa	Predicted RBP	10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	EXPH5	Q8NEV8	1989 aa		10.24	□□□□□ -0.77
PTPN7-204	ENST00000462815	ANK3	Q12955	4377 aa	Known RBP	10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815		A0A1W2PS29	197 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ANKRD33B	A6NCL7	494 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	TMPRSS11D	O60235	418 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	SH3BGRL	O75368	114 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	FAM155B	O75949	473 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	HPN	P05981	417 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	MTHFD2	P13995	350 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ALOX15	P16050	662 aa	Predicted RBP	10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	BMP5	P22003	454 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	TACR1	P25103	407 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	UQCRC1	P31930	480 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	SOX18	P35713	384 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	PEX19	P40855	299 aa		10.23	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms