RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 DYTNA2CJ06 578 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 ZAR1LA6NP61 321 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 H0YIG0 161 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 GOLGA8MH3BSY2 632 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 I3L1I5 382 aaPredicted RBP6.84□□□□□ -1.31
USP54-208ENST00000461520 PGRMC1O00264 195 aaKnown RBP6.84□□□□□ -1.31
USP54-208ENST00000461520 E2F3O00716 465 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 HAT1O14929 419 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 KIF5CO60282 957 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 SNRNP200O75643 2136 aaKnown RBP6.84□□□□□ -1.31
USP54-208ENST00000461520 HAUS5O94927 633 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 BMP10O95393 424 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 SYF2O95926 243 aaKnown RBP6.84□□□□□ -1.31
USP54-208ENST00000461520 SERPINA7P05543 415 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 HEXBP07686 556 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 CYC1P08574 325 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 PRR35P0CG20 571 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 HKR1P10072 659 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 ICAM2P13598 275 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 SLC6A2P23975 617 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 IMPA1P29218 277 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 AVPR1BP47901 424 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 FNTAP49354 379 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 SEC24CP53992 1094 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 ARG2P78540 354 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 MALLQ13021 153 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 PTK6Q13882 451 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 INAQ16352 499 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 THEMIS2Q5TEJ8 643 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 TMEM205Q6UW68 189 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 LINC00696Q6ZRV3 163 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 ADCK2Q7Z695 626 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 CPNE9Q8IYJ1 553 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 BCORP1Q8N888 145 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 CD200R1Q8TD46 325 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 MCOLN3Q8TDD5 553 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 PSMF1Q92530 271 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 HAS2Q92819 552 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 MS4A14Q96JA4 679 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 CCDC138Q96M89 665 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 PRAP1Q96NZ9 151 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 GPR21Q99679 349 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 MESP1Q9BRJ9 268 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 FAM167BQ9BTA0 163 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 ZNF700Q9H0M5 742 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 PCBD2Q9H0N5 130 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 CCDC177Q9NQR7 707 aaPredicted RBP6.84□□□□□ -1.31
USP54-208ENST00000461520 CCM2LQ9NUG4 571 aaPredicted RBP6.84□□□□□ -1.31
USP54-208ENST00000461520 TMEM184CQ9NVA4 438 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 PTGFRNQ9P2B2 879 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 FBXO5Q9UKT4 447 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 MRPS2Q9Y399 296 aaKnown RBP6.84□□□□□ -1.31
USP54-208ENST00000461520 MAD1L1Q9Y6D9 718 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 CCDC88CQ9P219 2028 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 KCNE1BA0A087WTH5 132 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 TRAV17A0A0B4J275 112 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 GOLGA6L10A0A0M3HER8 536 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 SLC16A5O15375 505 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 P2RX6O15547 441 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 PRSS23O95084 383 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 NSA2O95478 260 aaKnown RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 TTC4O95801 387 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 C8GP07360 202 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 F7P08709 466 aaPredicted RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 C8orf89P0DMQ9 161 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 EGR2P11161 476 aaPredicted RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 ITGAMP11215 1152 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 PGAM1P18669 254 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 CCND1P24385 295 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 TNFRSF8P28908 595 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 CLK3P49761 638 aaKnown RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 RGS4P49798 205 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 TNFSF10P50591 281 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 RPS15AP62244 130 aaKnown RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 TBPL1P62380 186 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 MPP1Q00013 466 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 EEF1A2Q05639 463 aaKnown RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 FAPQ12884 760 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 HSP90AA5PQ58FG0 334 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 RNASEH2BQ5TBB1 312 aaKnown RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 ABHD17BQ5VST6 288 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 FAAH2Q6GMR7 532 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 PIWIL4Q7Z3Z4 852 aaKnown RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 PCGF5Q86SE9 256 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 TICAM1Q8IUC6 712 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 PLD3Q8IV08 490 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 SRRM1Q8IYB3 904 aaKnown RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 TMEM132CQ8N3T6 1108 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 CAMKVQ8NCB2 501 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 CATSPER1Q8NEC5 780 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 OR1N1Q8NGS0 311 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 ACTRT1Q8TDG2 376 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 BRIX1Q8TDN6 353 aaKnown RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 METTL21AQ8WXB1 218 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 IMMP1LQ96LU5 166 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 SLX1AQ9BQ83 275 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 NAT9Q9BTE0 207 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 TUBB6Q9BUF5 446 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 FAM129AQ9BZQ8 928 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 LANCL2Q9NS86 450 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms