RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 GADD45GO95257 159 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 BUD31P41223 144 aaPredicted RBP12.93□□□□□ -0.34
CLK3-203ENST00000454830 RPS15AP62244 130 aaKnown RBP12.93□□□□□ -0.34
CLK3-203ENST00000454830 TDGQ13569 410 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 DEFB110Q30KQ9 67 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 SETD9Q8NE22 299 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 SLC37A2Q8TED4 501 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 NEURL3Q96EH8 262 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 SLC6A18Q96N87 628 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 SYNPO2LQ9H987 977 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 CXorf21Q9HAI6 301 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 PRDM7Q9NQW5 492 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 COMMD3-BMI1R4GMX3 469 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 ABCA7Q8IZY2 2146 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 UGT2B11O75310 529 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 JUNDP17535 347 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 USP51Q70EK9 711 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 SLC5A8Q8N695 610 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 NATD1Q8N6N6 113 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 OR9Q2Q8NGE9 314 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 OR9A2Q8NGT5 310 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 ASB12Q8WXK4 309 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 NRBF2Q96F24 287 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 C7orf34Q96L11 122 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 ZNF300Q96RE9 604 aaPredicted RBP12.93□□□□□ -0.34
CLK3-203ENST00000454830 ZNF607Q96SK3 696 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 TMEM38AQ9H6F2 299 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 ANKMY1Q9P2S6 941 aa12.93□□□□□ -0.34
CLK3-203ENST00000454830 TNFRSF10CO14798 259 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 ZBTB11O95625 1053 aaPredicted RBP12.92□□□□□ -0.34
CLK3-203ENST00000454830 NR2F6P10588 404 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 MPIP34949 423 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 PMS2P3Q13401 168 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 GPR155Q7Z3F1 870 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 P3H2Q8IVL5 708 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 PARP8Q8N3A8 854 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 AMBNQ9NP70 447 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 FAM20BO75063 409 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 BMP10O95393 424 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 HMGN2P05204 90 aaKnown RBP12.92□□□□□ -0.34
CLK3-203ENST00000454830 IGHV4-34P06331 123 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 MC3RP41968 323 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 RFX3P48380 749 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 RXRGP48443 463 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 CLCN2P51788 898 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 KIR2DS3Q14952 304 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 CTU2Q2VPK5 515 aaKnown RBP12.92□□□□□ -0.34
CLK3-203ENST00000454830 KRT73Q86Y46 540 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 SLC22A18ASQ8N1D0 253 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 CHDHQ8NE62 594 aaPredicted RBP12.92□□□□□ -0.34
CLK3-203ENST00000454830 UBE2FQ969M7 185 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 FOXQ1Q9C009 403 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 TRPV5Q9NQA5 729 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 P2RX2Q9UBL9 471 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 TMCC3Q9ULS5 477 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 CDC14AQ9UNH5 594 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 SLCO1B1Q9Y6L6 691 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 LOC105369274A0A096LPK9 316 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 LOC102723532A0A0G2JNH3 316 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 NR4A1P22736 598 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 CD6P30203 668 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 HHEXQ03014 270 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 LTB4RQ15722 352 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 ZBTB46Q86UZ6 589 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 C11orf74Q86VG3 221 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 OR4N4Q8N0Y3 316 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 SLC9A6Q92581 669 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 CNRIP1Q96F85 164 aaPredicted RBP12.92□□□□□ -0.34
CLK3-203ENST00000454830 SCARF2Q96GP6 870 aaPredicted RBP12.92□□□□□ -0.34
CLK3-203ENST00000454830 C16orf58Q96GQ5 468 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 ZNF347Q96SE7 839 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 IL21RQ9HBE5 538 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 SIRT3Q9NTG7 399 aaPredicted RBP12.92□□□□□ -0.34
CLK3-203ENST00000454830 SCN3BQ9NY72 215 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 KLF15Q9UIH9 416 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 SPAG17Q6Q759 2223 aa12.92□□□□□ -0.34
CLK3-203ENST00000454830 MAN2B1O00754 1011 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 PRICKLE3O43900 615 aaPredicted RBP12.91□□□□□ -0.34
CLK3-203ENST00000454830 CTSVO60911 334 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 SERPINB7O75635 380 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 CDH3P22223 829 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 HLCSP50747 726 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 VSX2P58304 361 aaPredicted RBP12.91□□□□□ -0.34
CLK3-203ENST00000454830 SMAD4Q13485 552 aaKnown RBP12.91□□□□□ -0.34
CLK3-203ENST00000454830 SAXO2Q658L1 398 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 VN1R4Q7Z5H5 301 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 PAQR7Q86WK9 346 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 FAM81AQ8TBF8 368 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 FAM131CQ96AQ9 280 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 LYVE1Q9Y5Y7 322 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 HS3ST3A1Q9Y663 406 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 URADA6NGE7 173 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 B3GALT2O43825 422 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 PDE9AO76083 593 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 FESP07332 822 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 SRFP11831 508 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 TLX1P31314 330 aaPredicted RBP12.91□□□□□ -0.34
CLK3-203ENST00000454830 PCBP4P57723 403 aaKnown RBP12.91□□□□□ -0.34
CLK3-203ENST00000454830 PPP1CAP62136 330 aa12.91□□□□□ -0.34
CLK3-203ENST00000454830 RPP38P78345 283 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms