RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 MS4A8Q9BY19 250 aa15.97■□□□□ 0.15
PRPF40A-204ENST00000450303 MEAF6Q9HAF1 191 aa15.97■□□□□ 0.15
PRPF40A-204ENST00000450303 KCNK13Q9HB14 408 aa15.97■□□□□ 0.15
PRPF40A-204ENST00000450303 STMN3Q9NZ72 180 aa15.97■□□□□ 0.15
PRPF40A-204ENST00000450303 VPS29Q9UBQ0 182 aa15.97■□□□□ 0.15
PRPF40A-204ENST00000450303 HIVEP3Q5T1R4 2406 aa15.97■□□□□ 0.15
PRPF40A-204ENST00000450303 DIAPH2O60879 1101 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 RSL1D1O76021 490 aaKnown RBP15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 CYC1P08574 325 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 ALOX15P16050 662 aaPredicted RBP15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 IL10P22301 178 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 TNFSF10P50591 281 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 ARFIP1P53367 373 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 AQP5P55064 265 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 OR4D2P58180 307 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 BTN3A2P78410 334 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 SRSF11Q05519 484 aaKnown RBP15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 ATP6AP1LQ52LC2 224 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 SPDYAQ5MJ70 313 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 DEPDC1Q5TB30 811 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 ABHD17BQ5VST6 288 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 KHDRBS2Q5VWX1 349 aaKnown RBP15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 PLAG1Q6DJT9 500 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 HIST2H2BCQ6DN03 193 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 NIPAL1Q6NVV3 410 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 TRIM40Q6P9F5 258 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 ZGRF1Q86YA3 2104 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 SSC4DQ8WTU2 575 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 TUBGCP3Q96CW5 907 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 METTL2AQ96IZ6 378 aaKnown RBP15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 PTCHD1Q96NR3 888 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 REXO4Q9GZR2 422 aaKnown RBP15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 TUBB1Q9H4B7 451 aa15.96■□□□□ 0.15
PRPF40A-204ENST00000450303 ICE1Q9Y2F5 2266 aa15.96■□□□□ 0.14
PRPF40A-204ENST00000450303 USP9YO00507 2555 aaPredicted RBP15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 A0A088AWK7 358 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 MYO1DO94832 1006 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 UBOX5O94941 541 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 SEMA3DO95025 777 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 ZNF10P21506 573 aaPredicted RBP15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 ARFIP2P53365 341 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 AP2B1P63010 937 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 SKP1P63208 163 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 MAD2L1Q13257 205 aaPredicted RBP15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 ADNP2Q6IQ32 1131 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 CGB2Q6NT52 195 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 EPGNQ6UW88 154 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 VN1R5Q7Z5H4 357 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 CA13Q8N1Q1 262 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 FAR1Q8WVX9 515 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 STON2Q8WXE9 905 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 GAL3ST3Q96A11 431 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 RGMAQ96B86 450 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 THOC1Q96FV9 657 aaKnown RBP15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 PPP1R36Q96LQ0 422 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 QRFPRQ96P65 431 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 LRRC37BQ96QE4 947 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 HBEGFQ99075 208 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 ACPTQ9BZG2 426 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 ROGDIQ9GZN7 287 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 OR51B5Q9H339 312 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 LRTM1Q9HBL6 345 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 DCTN4Q9UJW0 460 aa15.95■□□□□ 0.14
PRPF40A-204ENST00000450303 TRAV17A0A0B4J275 112 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 A0A0G2JND7 137 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 LRIT2A6NDA9 550 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 A8MUA0 341 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 NPIPB8E9PQR5 432 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 MAN1A2O60476 641 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 HNRNPCL1O60812 293 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 SEC22BO75396 215 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 GP1BBP13224 206 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 RNH1P13489 461 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 MAOAP21397 527 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 JAK1P23458 1154 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 PRPH2P23942 346 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 HNRNPH1P31943 449 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 RASSF2P50749 326 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 HMGCS1Q01581 520 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 ACSM2AQ08AH3 577 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 RUNX2Q13950 521 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 SMU1Q2TAY7 513 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 AP5B1Q2VPB7 878 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 ADPRMQ3LIE5 342 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 SPIN4Q56A73 249 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 XKR7Q5GH72 579 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 ACSM2BQ68CK6 577 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 NXNQ6DKJ4 435 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 RPUSD3Q6P087 351 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 FAM180AQ6UWF9 173 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 PAGE2Q7Z2X7 111 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 BEST3Q8N1M1 668 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 RNF175Q8N4F7 328 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 ST6GALNAC3Q8NDV1 305 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 OR2L5Q8NG80 312 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 CEP70Q8NHQ1 597 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 M1APQ8TC57 530 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 C10orf82Q8WW14 230 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 MS4A6EQ96DS6 147 aa15.94■□□□□ 0.14
PRPF40A-204ENST00000450303 RILPQ96NA2 401 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms