RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 SLC45A3Q96JT2 553 aa14.8□□□□□ -0.04
USP40-206ENST00000443711 TEX37Q96LM6 180 aa14.8□□□□□ -0.04
USP40-206ENST00000443711 BBS4Q96RK4 519 aa14.8□□□□□ -0.04
USP40-206ENST00000443711 PELOQ9BRX2 385 aaKnown RBP14.8□□□□□ -0.04
USP40-206ENST00000443711 CLMPQ9H6B4 373 aa14.8□□□□□ -0.04
USP40-206ENST00000443711 SAR1AQ9NR31 198 aa14.8□□□□□ -0.04
USP40-206ENST00000443711 ENTPD4Q9Y227 616 aa14.8□□□□□ -0.04
USP40-206ENST00000443711 MRPS18BQ9Y676 258 aaKnown RBP14.8□□□□□ -0.04
USP40-206ENST00000443711 APC2O95996 2303 aa14.8□□□□□ -0.04
USP40-206ENST00000443711 FAM234BA2RU67 622 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 MYO1GB0I1T2 1018 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 C1QTNF9BB2RNN3 333 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 TGFBR3LH3BV60 316 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 PDPK1O15530 556 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 RRP8O43159 456 aaKnown RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 IFNA16P05015 189 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 IL6P05231 212 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 C1QTNF9P0C862 333 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 SLC35E2P0CK97 266 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 LAMP1P11279 417 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 IL12AP29459 219 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 ADSLP30566 484 aaPredicted RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 NTSP30990 170 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 OTX2P32243 289 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 S100A3P33764 101 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 MPIP34949 423 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 FEN1P39748 380 aaKnown RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 EIF2S3P41091 472 aaKnown RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 STT3AP46977 705 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 POLR2JP52435 117 aaKnown RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 OR4D2P58180 307 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 PRSS53Q2L4Q9 553 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 AGKQ53H12 422 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 ZNF385BQ569K4 471 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 UNQ6494/PRO21346Q6UXR6 183 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 ANKRD37Q7Z713 158 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 MTDHQ86UE4 582 aaKnown RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 ST13P4Q8IZP2 240 aaPredicted RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 NUDT8Q8WV74 236 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 CNRIP1Q96F85 164 aaPredicted RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 RBM18Q96H35 190 aaKnown RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 ZNF681Q96N22 645 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 DGAT2Q96PD7 388 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 CCNL2Q96S94 520 aaPredicted RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 DUSP26Q9BV47 211 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 BHLHE41Q9C0J9 482 aaPredicted RBP14.79□□□□□ -0.04
USP40-206ENST00000443711 CLDN16Q9Y5I7 305 aa14.79□□□□□ -0.04
USP40-206ENST00000443711 LOC102723996A0A087X1L8 192 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 MYOCOSA0A1B0GUC4 107 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 FCHO1O14526 889 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 SLC22A2O15244 555 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 OR10H2O60403 315 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 TNNI3P19429 210 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 KIR3DL1P43629 444 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 PLIN5Q00G26 463 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 CEBPEQ15744 281 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 ZNF750Q32MQ0 723 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 FAM174BQ3ZCQ3 159 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 SFT2D3Q587I9 215 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 SPANXN4Q5MJ08 99 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 FAM180BQ6P0A1 224 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 LANCL3Q6ZV70 420 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 CPEB2Q7Z5Q1 589 aaKnown RBP14.78□□□□□ -0.04
USP40-206ENST00000443711 PIAS4Q8N2W9 510 aaPredicted RBP14.78□□□□□ -0.04
USP40-206ENST00000443711 LRRC25Q8N386 305 aaPredicted RBP14.78□□□□□ -0.04
USP40-206ENST00000443711 VPS37AQ8NEZ2 397 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 OR8J2Q8NGG1 315 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 OR9I1Q8NGQ6 314 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 ZFP28Q8NHY6 868 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 IP6K3Q96PC2 410 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 NMUR2Q9GZQ4 415 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 ADAP2Q9NPF8 381 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 PNO1Q9NRX1 252 aaKnown RBP14.78□□□□□ -0.04
USP40-206ENST00000443711 CCDC167Q9P0B6 97 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 HS3ST3B1Q9Y662 390 aa14.78□□□□□ -0.04
USP40-206ENST00000443711 URB1O60287 2271 aaKnown RBP14.78□□□□□ -0.04
USP40-206ENST00000443711 NUP214P35658 2090 aaPredicted RBP14.77□□□□□ -0.04
USP40-206ENST00000443711 A0A1W2PRB8 838 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 A0A1W2PS29 197 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 TMEM8BA6NDV4 472 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 ZNF891A8MT65 544 aaPredicted RBP14.77□□□□□ -0.05
USP40-206ENST00000443711 C9JVG2 144 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 DCTN3O75935 186 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 GALNSP34059 522 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 ZFP36L2P47974 494 aaKnown RBP14.77□□□□□ -0.05
USP40-206ENST00000443711 DGKQP52824 942 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 KCNK10P57789 538 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 CBX1P83916 185 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 KLF10Q13118 480 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 SRSF6Q13247 344 aaKnown RBP14.77□□□□□ -0.05
USP40-206ENST00000443711 IL10RAQ13651 578 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 UBAP2LQ14157 1087 aaKnown RBP14.77□□□□□ -0.05
USP40-206ENST00000443711 ELAVL1Q15717 326 aaKnown RBP14.77□□□□□ -0.05
USP40-206ENST00000443711 ANXA8L1Q5VT79 327 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 CPZQ66K79 652 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 OR4F3Q6IEY1 312 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 BLOC1S3Q6QNY0 202 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 LRRC69Q6ZNQ3 347 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 PPP1R32Q7Z5V6 425 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 FUNDC1Q8IVP5 155 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms