RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 EHD1Q9H4M9 534 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 CALHM2Q9HA72 323 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 PLAC1Q9HBJ0 212 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 SLC17A6Q9P2U8 582 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 CORO1CQ9ULV4 474 aaPredicted RBP13.19□□□□□ -0.3
HMGN1-208ENST00000443046 OARD1Q9Y530 152 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 MED12Q93074 2177 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 ANKDD1BA6NHY2 528 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 SCELO95171 688 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 TTC4O95801 387 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 ZNF37AP17032 561 aaPredicted RBP13.18□□□□□ -0.3
HMGN1-208ENST00000443046 SERPINB3P29508 390 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 KCNC1P48547 511 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 ID2Q02363 134 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 POU4F3Q15319 338 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 NTRK2Q16620 822 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 FNDC7Q5VTL7 733 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 FAM45BPQ6NSW5 357 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 SYDE1Q6ZW31 735 aaPredicted RBP13.18□□□□□ -0.3
HMGN1-208ENST00000443046 FAM45AQ8TCE6 357 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 ISL2Q96A47 359 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 RHBDF1Q96CC6 855 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 WDR34Q96EX3 536 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 WDYHV1Q96HA8 205 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 KCNC2Q96PR1 638 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 F2RL3Q96RI0 385 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 DOHHQ9BU89 302 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 GPRC5BQ9NZH0 403 aa13.18□□□□□ -0.3
HMGN1-208ENST00000443046 SONP18583 2426 aaKnown RBP13.17□□□□□ -0.3
HMGN1-208ENST00000443046 SH3D21A4FU49 640 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 EEF1E1-BLOC1S5C9J1V9 151 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 INAFM1C9JVW0 142 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 EEF1E1O43324 174 aaKnown RBP13.17□□□□□ -0.3
HMGN1-208ENST00000443046 FGF17O60258 216 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 WDR47O94967 919 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 BMP7P18075 431 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 ATP5A1P25705 553 aaKnown RBP13.17□□□□□ -0.3
HMGN1-208ENST00000443046 GDF1P27539 372 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 CDK9P50750 372 aaKnown RBP13.17□□□□□ -0.3
HMGN1-208ENST00000443046 SPANXN3Q5MJ09 141 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 TBCELQ5QJ74 424 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 P3H2Q8IVL5 708 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 VWA5B2Q8N398 1253 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 ACOT4Q8N9L9 421 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 C9orf106Q8NAJ2 232 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 BBOF1Q8ND07 529 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 FAM13CQ8NE31 585 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 CERS2Q96G23 380 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 FBXL20Q96IG2 436 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 Q96MF0 132 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 JSRP1Q96MG2 331 aaPredicted RBP13.17□□□□□ -0.3
HMGN1-208ENST00000443046 TBCDQ9BTW9 1192 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 BDH2Q9BUT1 245 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 CAPS2Q9BXY5 557 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 UGT2B28Q9BY64 529 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 ROGDIQ9GZN7 287 aa13.17□□□□□ -0.3
HMGN1-208ENST00000443046 COPS7BQ9H9Q2 264 aaPredicted RBP13.17□□□□□ -0.3
HMGN1-208ENST00000443046 MED12LQ86YW9 2145 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 ANK2Q01484 3957 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 NPEPPSL1A6NEC2 478 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 SMPD2O60906 423 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 LRATO95237 230 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 ACSL3O95573 720 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 COX7A2P14406 83 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 CD22P20273 847 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 CXCR5P32302 372 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 GGT5P36269 586 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 TGM3Q08188 693 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 FOXF2Q12947 444 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 BIKQ13323 160 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 E2F2Q14209 437 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 MSS51Q4VC12 460 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 DCST1Q5T197 706 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 RNASEH2BQ5TBB1 312 aaKnown RBP13.16□□□□□ -0.3
HMGN1-208ENST00000443046 IGDCC3Q8IVU1 814 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 OR4N5Q8IXE1 308 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 PPIL6Q8IXY8 311 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 NKAPQ8N5F7 415 aaKnown RBP13.16□□□□□ -0.3
HMGN1-208ENST00000443046 ZNF441Q8N8Z8 693 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 LRRN4CLQ8ND94 238 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 ZPLD1Q8TCW7 415 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 PIGTQ969N2 578 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 PPWD1Q96BP3 646 aaKnown RBP13.16□□□□□ -0.3
HMGN1-208ENST00000443046 ZNF597Q96LX8 424 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 TRIB1Q96RU8 372 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 EGFL8Q99944 293 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 RBM24Q9BX46 236 aaKnown RBP13.16□□□□□ -0.3
HMGN1-208ENST00000443046 WWTR1Q9GZV5 400 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 GALNT8Q9NY28 637 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 CAMK2AQ9UQM7 478 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 SLC6A5Q9Y345 797 aa13.16□□□□□ -0.3
HMGN1-208ENST00000443046 EXPH5Q8NEV8 1989 aa13.15□□□□□ -0.3
HMGN1-208ENST00000443046 TAPBPO15533 448 aa13.15□□□□□ -0.3
HMGN1-208ENST00000443046 BANF1O75531 89 aa13.15□□□□□ -0.3
HMGN1-208ENST00000443046 TRAPPC6AO75865 159 aa13.15□□□□□ -0.3
HMGN1-208ENST00000443046 SNX4O95219 450 aa13.15□□□□□ -0.3
HMGN1-208ENST00000443046 CLPSP04118 112 aa13.15□□□□□ -0.3
HMGN1-208ENST00000443046 HIST1H1TP22492 207 aaPredicted RBP13.15□□□□□ -0.3
HMGN1-208ENST00000443046 SOX18P35713 384 aa13.15□□□□□ -0.3
HMGN1-208ENST00000443046 MSH2P43246 934 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms