RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TLX1P31314 330 aaPredicted RBP13.39□□□□□ -0.27
SDC1-204ENST00000429035 STX2P32856 288 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 BUD31P41223 144 aaPredicted RBP13.39□□□□□ -0.27
SDC1-204ENST00000429035 ZFP36L2P47974 494 aaKnown RBP13.39□□□□□ -0.27
SDC1-204ENST00000429035 ART1P52961 327 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 HNRNPH2P55795 449 aaKnown RBP13.39□□□□□ -0.27
SDC1-204ENST00000429035 GPX6P59796 221 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 RPS13P62277 151 aaKnown RBP13.39□□□□□ -0.27
SDC1-204ENST00000429035 SLC10A1Q14973 349 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 UAP1Q16222 522 aaPredicted RBP13.39□□□□□ -0.27
SDC1-204ENST00000429035 PIGGQ5H8A4 983 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 CES4AQ5XG92 561 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 SLC22A10Q63ZE4 541 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 OR4C11Q6IEV9 310 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 RNF111Q6ZNA4 994 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 DGAT2L6Q6ZPD8 337 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 MAATS1Q7Z4T9 603 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 GPR180Q86V85 440 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 LAS2Q8IYD9 372 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 HUS1BQ8NHY5 278 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 FBF1Q8TES7 1133 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 UBTD2Q8WUN7 234 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 KCTD4Q8WVF5 259 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 RGMAQ96B86 450 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 NXNL1Q96CM4 212 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 SPACA9Q96E40 222 aaPredicted RBP13.39□□□□□ -0.27
SDC1-204ENST00000429035 RBM18Q96H35 190 aaKnown RBP13.39□□□□□ -0.27
SDC1-204ENST00000429035 SENP5Q96HI0 755 aaPredicted RBP13.39□□□□□ -0.27
SDC1-204ENST00000429035 UBXN10Q96LJ8 280 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 ATOH8Q96SQ7 321 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 SLC6A15Q9H2J7 730 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 ACTR8Q9H981 624 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.39□□□□□ -0.27
SDC1-204ENST00000429035 MS4A12Q9NXJ0 267 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 SPRR3Q9UBC9 169 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 RNF14Q9UBS8 474 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 Q9UFV3 132 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 PYCARDQ9ULZ3 195 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 EXPH5Q8NEV8 1989 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 GLOD5A6NK44 160 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 SYCE1LA8MT33 242 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 PLPP1O14494 284 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 KLK8O60259 260 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 WDR1O75083 606 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 HOXD4P09016 255 aaPredicted RBP13.38□□□□□ -0.27
SDC1-204ENST00000429035 GSTA2P09210 222 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 NR2F6P10588 404 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 TRPC1P48995 793 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 PLTPP55058 493 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 IRF9Q00978 393 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 FOXO1Q12778 655 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 SNTB1Q13884 538 aaKnown RBP13.38□□□□□ -0.27
SDC1-204ENST00000429035 ZNF267Q14586 743 aaPredicted RBP13.38□□□□□ -0.27
SDC1-204ENST00000429035 MPEG1Q2M385 716 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 DEPDC1Q5TB30 811 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 CYP20A1Q6UW02 462 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 ISCA2Q86U28 154 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 OR10G3Q8NGC4 313 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 NRGNQ92686 78 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 FBXL20Q96IG2 436 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 ZNF703Q9H7S9 590 aaPredicted RBP13.38□□□□□ -0.27
SDC1-204ENST00000429035 IGSF5Q9NSI5 407 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 GRHL1Q9NZI5 618 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 KCNN3Q9UGI6 736 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 UTP11Q9Y3A2 253 aaKnown RBP13.38□□□□□ -0.27
SDC1-204ENST00000429035 TACC2O95359 2948 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 SPG11Q96JI7 2443 aa13.38□□□□□ -0.27
SDC1-204ENST00000429035 A0A1B0GVC2 190 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 LRRC14BA6NHZ5 514 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 DIAPH2O60879 1101 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 NADKO95544 446 aaPredicted RBP13.37□□□□□ -0.27
SDC1-204ENST00000429035 ENDOUP21128 410 aaKnown RBP13.37□□□□□ -0.27
SDC1-204ENST00000429035 GDF1P27539 372 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 CRABP2P29373 138 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 ADH7P40394 386 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 CASP2P42575 452 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 PIK3CGP48736 1102 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 IGLV3-21P80748 117 aaPredicted RBP13.37□□□□□ -0.27
SDC1-204ENST00000429035 TESK1Q15569 626 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 CPSF6Q16630 551 aaKnown RBP eCLIP13.37□□□□□ -0.27
SDC1-204ENST00000429035 PFKFB4Q16877 469 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 RTL6Q6ICC9 239 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 ZZZ3Q8IYH5 903 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 FBXW8Q8N3Y1 598 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 C7orf57Q8NEG2 295 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 SPATA4Q8NEY3 305 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 TANKQ92844 425 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 ZNF597Q96LX8 424 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 PELOQ9BRX2 385 aaKnown RBP13.37□□□□□ -0.27
SDC1-204ENST00000429035 DOHHQ9BU89 302 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 WWTR1Q9GZV5 400 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 WDR41Q9HAD4 459 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 LYARQ9NX58 379 aaKnown RBP13.37□□□□□ -0.27
SDC1-204ENST00000429035 CPSF2Q9P2I0 782 aaKnown RBP13.37□□□□□ -0.27
SDC1-204ENST00000429035 B4GALT7Q9UBV7 327 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 ADGRE2Q9UHX3 823 aa13.37□□□□□ -0.27
SDC1-204ENST00000429035 AKAP6Q13023 2319 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 HIVEP1P15822 2718 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 C15orf38-AP3S2A0A0A6YYH1 394 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 SUSD5O60279 629 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms