RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ACSL6Q9UKU0 697 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 FER1L5A0AVI2 2057 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 LOC100653049A0A140TA62 436 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 CCT8L1PA6NM43 557 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 IDSB3KWA1 339 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 FAM227AF5H4B4 570 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 RFXANKO14593 260 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 PGRMC2O15173 223 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 HNRNPCL1O60812 293 aaKnown RBP9.49□□□□□ -0.89
CD44-207ENST00000425428 ALOX12BO75342 701 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 KRT34O76011 436 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 CPSF4O95639 269 aaKnown RBP9.49□□□□□ -0.89
CD44-207ENST00000425428 SLC35E2P0CK97 266 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 COX4I1P13073 169 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 CPMP14384 443 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 PTPN4P29074 926 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 FEN1P39748 380 aaKnown RBP9.49□□□□□ -0.89
CD44-207ENST00000425428 STAT5AP42229 794 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 OR4D2P58180 307 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 PRR5P85299 388 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 PDE7AQ13946 482 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 RCAN2Q14206 197 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 SSPNQ14714 243 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 KRT72Q14CN4 511 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 SPANXN4Q5MJ08 99 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 ZNF385CQ66K41 422 aaPredicted RBP9.49□□□□□ -0.89
CD44-207ENST00000425428 MRPL14Q6P1L8 145 aaKnown RBP9.49□□□□□ -0.89
CD44-207ENST00000425428 FAM199XQ6PEV8 388 aaPredicted RBP9.49□□□□□ -0.89
CD44-207ENST00000425428 SZRD1Q7Z422 152 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 MARCH9Q86YJ5 346 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 RIMKLAQ8IXN7 391 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 ST13P4Q8IZP2 240 aaPredicted RBP9.49□□□□□ -0.89
CD44-207ENST00000425428 ZNF248Q8NDW4 579 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 OR2Y1Q8NGV0 311 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.49□□□□□ -0.89
CD44-207ENST00000425428 CT55Q8WUE5 264 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 OR5P2Q8WZ92 322 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 RIT1Q92963 219 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 PMEPA1Q969W9 287 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 NACC2Q96BF6 587 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 MOAP1Q96BY2 351 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 NSL1Q96IY1 281 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 SH3GL1Q99961 368 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 MYLK2Q9H1R3 596 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 PNO1Q9NRX1 252 aaKnown RBP9.49□□□□□ -0.89
CD44-207ENST00000425428 COPS7AQ9UBW8 275 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 ANGPTL2Q9UKU9 493 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 VPS4AQ9UN37 437 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 SNX8Q9Y5X2 465 aa9.49□□□□□ -0.89
CD44-207ENST00000425428 TEX51A0A1B0GUA7 166 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 VSTM2BA6NLU5 285 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 RRP8O43159 456 aaKnown RBP9.48□□□□□ -0.89
CD44-207ENST00000425428 NPPAP01160 153 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 ABCB1P08183 1280 aaPredicted RBP9.48□□□□□ -0.89
CD44-207ENST00000425428 LAMP1P11279 417 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 CALB2P22676 271 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 PPIBP23284 216 aaKnown RBP9.48□□□□□ -0.89
CD44-207ENST00000425428 SOAT1P35610 550 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 CHI3L1P36222 383 aaPredicted RBP9.48□□□□□ -0.89
CD44-207ENST00000425428 STT3AP46977 705 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 TRPC1P48995 793 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 HSPB3Q12988 150 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 TP53BP2Q13625 1128 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 COL9A2Q14055 689 aaPredicted RBP9.48□□□□□ -0.89
CD44-207ENST00000425428 UGT8Q16880 541 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 VPS26BQ4G0F5 336 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 COQ5Q5HYK3 327 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 FAM91A1Q658Y4 838 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 OR4F3Q6IEY1 312 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 ANKRD26P1Q6NSI1 321 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 ZNF517Q6ZMY9 492 aaPredicted RBP9.48□□□□□ -0.89
CD44-207ENST00000425428 GK5Q6ZS86 529 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 SNX32Q86XE0 403 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 OR4N5Q8IXE1 308 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 CCDC116Q8IYX3 515 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 DTWD1Q8N5C7 304 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 OR9I1Q8NGQ6 314 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 LPAR4Q99677 370 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 CCDC106Q9BWC9 280 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 VN1R1Q9GZP7 353 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 RAD21L1Q9H4I0 556 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 ACTL8Q9H568 366 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 ZNF385DQ9H6B1 395 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 ADAP2Q9NPF8 381 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 ASCL3Q9NQ33 180 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 C5AR2Q9P296 337 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 BTNL2Q9UIR0 455 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 TCFL5Q9UL49 500 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 CORO2BQ9UQ03 480 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 CFL2Q9Y281 166 aa9.48□□□□□ -0.89
CD44-207ENST00000425428 NUP214P35658 2090 aaPredicted RBP9.48□□□□□ -0.89
CD44-207ENST00000425428 A0A1W2PNU3 283 aaPredicted RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 PMS2P1A4D2B8 440 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 EVPLLA8MZ36 301 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 MRASO14807 208 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ANKRD28O15084 1053 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 FGF17O60258 216 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ERN1O75460 977 aaKnown RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 KRT75O95678 551 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ADRB1P08588 477 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms