RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ZNF585AQ6P3V2 769 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 ARHGAP11AQ6P4F7 1023 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 IL20RBQ6UXL0 311 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 ABHD13Q7L211 337 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 ZZZ3Q8IYH5 903 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 TCAIMQ8N3R3 496 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 PDPRQ8NCN5 879 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 OR2M7Q8NG81 312 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 RDH11Q8TC12 318 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 ASB5Q8WWX0 329 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 ATL1Q8WXF7 558 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 RHBDF1Q96CC6 855 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 FBXL8Q96CD0 374 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 HAUS8Q9BT25 410 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 TTTY12Q9BZ98 90 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 CD274Q9NZQ7 290 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 CPSF2Q9P2I0 782 aaKnown RBP11.96□□□□□ -0.49
LINC00339-202ENST00000416769 XPR1Q9UBH6 696 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 Q9UFV3 132 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 PTBP2Q9UKA9 531 aaKnown RBP11.96□□□□□ -0.49
LINC00339-202ENST00000416769 L3MBTL1Q9Y468 752 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 KIAA1549Q9HCM3 1950 aa11.96□□□□□ -0.5
LINC00339-202ENST00000416769 MED12Q93074 2177 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 KDM4EB2RXH2 506 aaPredicted RBP11.95□□□□□ -0.5
LINC00339-202ENST00000416769 UBXN8O00124 270 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 PSMD12O00232 456 aaPredicted RBP11.95□□□□□ -0.5
LINC00339-202ENST00000416769 SMIM24O75264 130 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 S100BP04271 92 aaPredicted RBP11.95□□□□□ -0.5
LINC00339-202ENST00000416769 ENDOUP21128 410 aaKnown RBP11.95□□□□□ -0.5
LINC00339-202ENST00000416769 CCND1P24385 295 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 GGT5P36269 586 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 GDF5P43026 501 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 ETV4P43268 484 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 MAGEA5P43359 124 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 DNASE1L1P49184 302 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 SSR4P51571 173 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 WNT3P56703 355 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 PLGLB1Q02325 96 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 MPP2Q14168 576 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 CEBPEQ15744 281 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 FBXO48Q5FWF7 155 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 THOC6Q86W42 341 aaKnown RBP11.95□□□□□ -0.5
LINC00339-202ENST00000416769 SLC22A9Q8IVM8 553 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 TMEM251Q8N6I4 163 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 OR10Q1Q8NGQ4 319 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 DOK4Q8TEW6 326 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 FAM111AQ96PZ2 611 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 EGFL8Q99944 293 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 GPATCH1Q9BRR8 931 aaKnown RBP11.95□□□□□ -0.5
LINC00339-202ENST00000416769 TTYH2Q9BSA4 534 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 C12orf65Q9H3J6 166 aaKnown RBP11.95□□□□□ -0.5
LINC00339-202ENST00000416769 ZDHHC11Q9H8X9 412 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 SLC17A7Q9P2U7 560 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 ERVK-11Q9UQG0 969 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 SLC22A14Q9Y267 594 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 ABCA2Q9BZC7 2435 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 NINQ8N4C6 2090 aa11.95□□□□□ -0.5
LINC00339-202ENST00000416769 TMEM120BA0PK00 339 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 A8MVJ9 347 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 SUPT3HB4E1H0 165 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 G3V2L1 256 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 STX16-NPEPL1H3BU86 382 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 STX16O14662 325 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 TAPBPO15533 448 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 DLX3O60479 287 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 PRAMEF4O60810 478 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 SUPT3HO75486 399 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 GLSO94925 669 aaPredicted RBP11.94□□□□□ -0.5
LINC00339-202ENST00000416769 CCL3P10147 92 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 MYL2P10916 166 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 CPA3P15088 417 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 ATP5F1P24539 256 aaPredicted RBP11.94□□□□□ -0.5
LINC00339-202ENST00000416769 ACVR2AP27037 513 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 CERS1P27544 350 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 AHRP35869 848 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 ALDH18A1P54886 795 aaKnown RBP11.94□□□□□ -0.5
LINC00339-202ENST00000416769 PPP2R2AP63151 447 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 ID2Q02363 134 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 FOXD4Q12950 439 aaPredicted RBP11.94□□□□□ -0.5
LINC00339-202ENST00000416769 PRAMEF9Q5VWM5 478 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 TMEM211Q6ICI0 200 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 METTL2BQ6P1Q9 378 aaKnown RBP11.94□□□□□ -0.5
LINC00339-202ENST00000416769 NXPE4Q6UWF7 544 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 ZYG11AQ6WRX3 759 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 VN1R5Q7Z5H4 357 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 TGIF2LYQ8IUE0 185 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 EID3Q8N140 333 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 CCDC63Q8NA47 563 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 ARMC2Q8NEN0 867 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 CCDC126Q96EE4 140 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 VMP1Q96GC9 406 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 RASL10BQ96S79 203 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 TIMMDC1Q9NPL8 285 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 PRTFDC1Q9NRG1 225 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 HPF1Q9NWY4 346 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 DNAJB12Q9NXW2 375 aaKnown RBP11.94□□□□□ -0.5
LINC00339-202ENST00000416769 NKIRAS1Q9NYS0 192 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 SPRR3Q9UBC9 169 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 KCNN3Q9UGI6 736 aa11.94□□□□□ -0.5
LINC00339-202ENST00000416769 PPIEQ9UNP9 301 aaKnown RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms