RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 FAM107AO95990 144 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 IL6P05231 212 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 SERPINA7P05543 415 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 IL3P08700 152 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 ANXA4P09525 319 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 OR1D4P47884 311 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 SLC37A1P57057 533 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 SLC26A5P58743 744 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 C18orf63Q68DL7 685 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 ART5Q96L15 291 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 SECISBP2Q96T21 854 aaKnown RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 TRIM55Q9BYV6 548 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 CENPHQ9H3R5 247 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 SLAMF7Q9NQ25 335 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 ACSS2Q9NR19 701 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 CLDN4O14493 209 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 PGRMC2O15173 223 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 DNAJA2O60884 412 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 MYO1DO94832 1006 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 TCN2P20062 427 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 TLX1P31314 330 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 RAP1GDS1P52306 607 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 RAB8AP61006 207 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 DCAF7P61962 342 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 CYP4F2P78329 520 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 OCA2Q04671 838 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 AIMP2Q13155 320 aaKnown RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 PIGGQ5H8A4 983 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 SAXO2Q658L1 398 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 HEPHL1Q6MZM0 1159 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 LAPTM4BQ86VI4 370 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 CHDHQ8NE62 594 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 OR4K14Q8NGD5 310 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 NPAS2Q99743 824 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 TCF7L2Q9NQB0 619 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 IL17BQ9UHF5 180 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 GPN3Q9UHW5 284 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 KMT2BQ9UMN6 2715 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 KCNMB2Q9Y691 235 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 BBIP1A8MTZ0 92 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 RTCAO00442 366 aaKnown RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 CBX7O95931 251 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 G6PDP11413 515 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 PORP16435 677 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 DRD5P21918 477 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 CPN2P22792 545 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 TRPC1P48995 793 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 MVDP53602 400 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 EMP2P54851 167 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 TAS2R50P59544 299 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 KRT72Q14CN4 511 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 SYT16Q17RD7 645 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 HYAL4Q2M3T9 481 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 IL23RQ5VWK5 629 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 PRAMEF8Q5VWM4 474 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 PRAMEF7Q5VXH5 474 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 LIX1Q8N485 282 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 B3GNT7Q8NFL0 401 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 ZCCHC14Q8WYQ9 949 aaKnown RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 MR1Q95460 341 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 SCMH1Q96GD3 660 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 EBF4Q9BQW3 602 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 NUF2Q9BZD4 464 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 SAP130Q9H0E3 1048 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 COPS7BQ9H9Q2 264 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 COPG1Q9Y678 874 aaKnown RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 ZFHX2Q9C0A1 2572 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 IGLV3-32A0A0A0MS00 114 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 GOLGA8QA0A0J9YX86 632 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 WDR91A4D1P6 747 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 GOLGA8OA6NCC3 632 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 GOLGA8NF8WBI6 632 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 C8orf89P0DMQ9 161 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 SPINK2P20155 84 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 HPCAL1P37235 193 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 GZMMP51124 257 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 PLA2G16P53816 162 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 MAT1AQ00266 395 aaKnown RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 RHDQ02161 417 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 FOLH1Q04609 750 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 NR6A1Q15406 480 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 INAQ16352 499 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 VWA2Q5GFL6 755 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 ANXA8L1Q5VT79 327 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 LRRC25Q8N386 305 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 MGARPQ8TDB4 240 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 UCN3Q969E3 161 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 KIAA1143Q96AT1 154 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 TEX37Q96LM6 180 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 FER1L6-AS2Q96M78 137 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 VSTM2LQ96N03 204 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 STACQ99469 402 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 GPATCH1Q9BRR8 931 aaKnown RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 GLIPR2Q9H4G4 154 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 RABEP2Q9H5N1 569 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 NEUROD4Q9HD90 331 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 SAR1AQ9NR31 198 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 DSPPQ9NZW4 1301 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 ANKRD33BA6NCL7 494 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 ACOX3O15254 700 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms