RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SNED1Q8TER0 1413 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 A0A1W2PQ72 361 aa8.77□□□□□ -1
LIMCH1-202ENST00000381753 SNPHO15079 494 aa8.77□□□□□ -1
LIMCH1-202ENST00000381753 CCT3P49368 545 aaKnown RBP8.77□□□□□ -1
LIMCH1-202ENST00000381753 HK2P52789 917 aa8.77□□□□□ -1
LIMCH1-202ENST00000381753 RPE65Q16518 533 aa8.77□□□□□ -1
LIMCH1-202ENST00000381753 ANKRD26P1Q6NSI1 321 aa8.77□□□□□ -1
LIMCH1-202ENST00000381753 PAQR3Q6TCH7 311 aa8.77□□□□□ -1
LIMCH1-202ENST00000381753 TMBIM4Q9HC24 238 aa8.77□□□□□ -1
LIMCH1-202ENST00000381753 NLE1Q9NVX2 485 aaPredicted RBP8.77□□□□□ -1
LIMCH1-202ENST00000381753 REXO2Q9Y3B8 237 aaKnown RBP8.77□□□□□ -1
LIMCH1-202ENST00000381753 PATE3B3GLJ2 98 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 HOXC11O43248 304 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF3P17036 446 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 SLC1A2P43004 574 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 GALNT1Q10472 559 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 DLG1Q12959 904 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 LCP2Q13094 533 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 C4orf17Q53FE4 359 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 TRIQKQ629K1 86 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 OR4C11Q6IEV9 310 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ARHGAP36Q6ZRI8 547 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 BNIPLQ7Z465 357 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 SLC30A8Q8IWU4 369 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF786Q8N393 782 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 TBC1D20Q96BZ9 403 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 PAPOLGQ9BWT3 736 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 DSN1Q9H410 356 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 OR6C2Q9NZP2 312 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 GPC6Q9Y625 555 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 IDH3BO43837 385 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 NME6O75414 186 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 SOX30O94993 753 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 CD48P09326 243 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 RPS6KA3P51812 740 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 AIMP2Q13155 320 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 SMCO1Q147U7 214 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 PLK5Q496M5 336 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ABCA11PQ4W5N1 156 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 CMC1Q7Z7K0 106 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ARHGAP12Q8IWW6 846 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 REXO1L1PQ8IX06 675 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 MRPL41Q8IXM3 137 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 KLHDC8AQ8IYD2 350 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 SCRN2Q96FV2 425 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 NSL1Q96IY1 281 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 COL21A1Q96P44 957 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 PITX2Q99697 317 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 SLC30A3Q99726 388 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 SLC35A5Q9BS91 424 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 LMF2Q9BU23 707 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 NARFLQ9H6Q4 476 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 OXSMQ9NWU1 459 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 DTLQ9NZJ0 730 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 BLACEA4D250 179 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 KHDRBS3O75525 346 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 LYPLA1O75608 230 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 APOC1P02654 83 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 MPC1LP0DKB6 136 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 CD9P21926 228 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ITGB8P26012 769 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 TLE3Q04726 772 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 GUSBP11Q6P575 273 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 CDHR3Q6ZTQ4 885 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF440Q8IYI8 595 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF101Q8IZC7 436 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF565Q8N9K5 539 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 OR56A3Q8NH54 315 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 TSGA13Q96PP4 275 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 BPNT1O95861 308 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 CHRNGP07510 517 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 CHRM5P08912 532 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 DSTNP60981 165 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 HERVK_113P63132 956 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ERVK-8P63133 956 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 KPNB1Q14974 876 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 NHSL2Q5HYW2 709 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 MARCH8Q5T0T0 291 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ZCCHC7Q8N3Z6 543 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF516Q92618 1163 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 TMEM68Q96MH6 324 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ERVK-6Q9BXR3 956 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 AGXT2Q9BYV1 514 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 YIPF3Q9GZM5 350 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 SIX4Q9UIU6 781 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 ERVK-19Q9WJR5 959 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 MRPS7Q9Y2R9 242 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 FADS3Q9Y5Q0 445 aa8.77□□□□□ -1.01
LIMCH1-202ENST00000381753 LRP5O75197 1615 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 TP73O15350 636 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 BANF1O75531 89 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 KDM4BO94953 1096 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 G6PDP11413 515 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 GABRG2P18507 467 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 BMP5P22003 454 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 EPHA5P54756 1037 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 CARD18P57730 90 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 MAT1AQ00266 395 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 MGAT3Q09327 533 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 INCA1Q0VD86 236 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms