RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 YY1AP1Q9H869 796 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 FSCN3Q9NQT6 498 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 DNAJB9Q9UBS3 223 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 PHF11Q9UIL8 331 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 RPS6KA6Q9UK32 745 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 ABCG2Q9UNQ0 655 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 ENTPD4Q9Y227 616 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 UNC13CQ8NB66 2214 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 PRAMEF27A3QJZ7 478 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 RHPN2P1A8MT19 583 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 HMGN4O00479 90 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 TXNDC9O14530 226 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 EI24O14681 340 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 HRO43593 1189 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 CST1P01037 141 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 OPN1SWP03999 348 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 ZNF23P17027 643 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 CSNK2A2P19784 350 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-202ENST00000372405 GPC1P35052 558 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 BUD31P41223 144 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-202ENST00000372405 RXRGP48443 463 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 EPHA4P54764 986 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 OR1D5P58170 312 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 SIM1P81133 766 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-202ENST00000372405 CFHR1Q03591 330 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 SPIDRQ14159 915 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 GK3PQ14409 553 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 LTB4RQ15722 352 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 ZNF630Q2M218 657 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-202ENST00000372405 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.99□□□□□ -0.33
PTPRF-202ENST00000372405 NHSL2Q5HYW2 709 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 CCDC80Q76M96 950 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 KANSL1Q7Z3B3 1105 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 TMEM179BQ7Z7N9 219 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 ZDHHC21Q8IVQ6 265 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 C1orf210Q8IVY1 113 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 ZC3H7AQ8IWR0 971 aaKnown RBP12.99□□□□□ -0.33
PTPRF-202ENST00000372405 PACRGLQ8N7B6 248 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 OR9A2Q8NGT5 310 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 RAB8BQ92930 207 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 POP5Q969H6 163 aaKnown RBP12.99□□□□□ -0.33
PTPRF-202ENST00000372405 TAMM41Q96BW9 452 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 TCTN2Q96GX1 697 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 RSPO3Q9BXY4 272 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-202ENST00000372405 LYRM4Q9HD34 91 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 IL1RAPQ9NPH3 570 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 VNN3Q9NY84 501 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 UBAP1Q9NZ09 502 aa12.99□□□□□ -0.33
PTPRF-202ENST00000372405 IGHV1OR21-1A0A087WYE8 117 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 CYR61O00622 381 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 NUDT21O43809 227 aaKnown RBP12.98□□□□□ -0.33
PTPRF-202ENST00000372405 SOX18P35713 384 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 KCNJ10P78508 379 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 PPP1R8Q12972 351 aaKnown RBP12.98□□□□□ -0.33
PTPRF-202ENST00000372405 MED21Q13503 144 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 MYBPC3Q14896 1274 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 TMEM107Q6UX40 140 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 TMEM64Q6YI46 380 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 TSEN54Q7Z6J9 526 aaKnown RBP12.98□□□□□ -0.33
PTPRF-202ENST00000372405 OR4N5Q8IXE1 308 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 HS3ST5Q8IZT8 346 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 CA13Q8N1Q1 262 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 ZFP28Q8NHY6 868 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 SLC38A5Q8WUX1 472 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 NCSTNQ92542 709 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 TBC1D20Q96BZ9 403 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 C7orf34Q96L11 122 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 RAB33BQ9H082 229 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 ANKRA2Q9H9E1 313 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 A4GALTQ9NPC4 353 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 ZCCHC3Q9NUD5 404 aaKnown RBP12.98□□□□□ -0.33
PTPRF-202ENST00000372405 EPHA6Q9UF33 1036 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 TLCD2A6NGC4 264 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 hCG_2039718K7EN88 272 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 SGK494L7N484 410 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 M0QX08 132 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 B4GAT1O43505 415 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 TFPTP0C1Z6 253 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 ZNF10P21506 573 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-202ENST00000372405 HSPA13P48723 471 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 ZC3H12BQ5HYM0 836 aaKnown RBP12.98□□□□□ -0.33
PTPRF-202ENST00000372405 CRB2Q5IJ48 1285 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 OR52E8Q6IFG1 317 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 MARVELD2Q8N4S9 558 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 TMEM105Q8N8V8 129 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 OR5D16Q8NGK9 328 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 OR9A4Q8NGU2 314 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 N4BP2L2Q92802 583 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-202ENST00000372405 TPD52L3Q96J77 140 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 MAGED4Q96JG8 741 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 ZNF285Q96NJ3 590 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 NR1H4Q96RI1 486 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-202ENST00000372405 ZSCAN32Q9NX65 697 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 KLHL3Q9UH77 587 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 ZNF780BQ9Y6R6 833 aa12.98□□□□□ -0.33
PTPRF-202ENST00000372405 PRAMEF25A6NGN4 478 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 FAM227AF5H4B4 570 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 SUV39H1O43463 412 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 RDH16O75452 317 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 DIRAS1O95057 198 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms