RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF730Q6ZMV8 503 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 KIAA0408Q6ZU52 694 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 GPRIN3Q6ZVF9 776 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SLC36A1Q7Z2H8 476 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 BMP8AQ7Z5Y6 402 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 KCTD20Q7Z5Y7 419 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 GALNT5Q7Z7M9 940 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SLC38A6Q8IZM9 456 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 KLHDC9Q8NEP7 349 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SLC30A5Q8TAD4 765 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 FBXL8Q96CD0 374 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 CPNE1Q99829 537 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SIKE1Q9BRV8 207 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SPRTNQ9H040 489 aaPredicted RBP3.91□□□□□ -1.78
USH2A-202ENST00000366942 SMYD3Q9H7B4 428 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 TXNRD2Q9NNW7 524 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 ABCB9Q9NP78 766 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 THAP10Q9P2Z0 257 aaPredicted RBP3.91□□□□□ -1.78
USH2A-202ENST00000366942 L1RE1Q9UN81 338 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 ING4Q9UNL4 249 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 CMAHPQ9Y471 501 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 PREX2Q70Z35 1606 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 CNTNAP5Q8WYK1 1306 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 SSU72P8A0A1W2PR75 194 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 TIMM23O14925 209 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 SCO1O75880 301 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 MT-CO2P00403 227 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 APEHP13798 732 aaKnown RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 HGFP14210 728 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 UCHL3P15374 230 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 EGR1P18146 543 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 PVALBP20472 110 aaPredicted RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 ITPKAP23677 461 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 CDK7P50613 346 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 KIAA1024LP59773 190 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 PHC1P78364 1004 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 RBBP4Q09028 425 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 DEFB121Q5J5C9 76 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 TSSK4Q6SA08 328 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 TMPRSS11AQ6ZMR5 421 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 ARHGAP22Q7Z5H3 698 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 FJX1Q86VR8 437 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 UBE2DNLQ8IWF7 75 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 IZUMO1Q8IYV9 350 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 MMP21Q8N119 569 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 GALNT16Q8N428 558 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 LINC00301Q8NCQ3 95 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 RBM15BQ8NDT2 890 aaKnown RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 PAQR8Q8TEZ7 354 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 CST11Q9H112 138 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 REEP1Q9H902 201 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 HMG20AQ9NP66 347 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 ZCCHC3Q9NUD5 404 aaKnown RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 NLE1Q9NVX2 485 aaPredicted RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 CD84Q9UIB8 345 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 NOCTQ9UK39 431 aaKnown RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 A0A1W2PRB8 838 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 ZNF840PA6NDX5 716 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 SIGLEC16A6NMB1 481 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 KCNK1O00180 336 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 UNC5CO95185 931 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 ANXA4P09525 319 aaPredicted RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 TFPTP0C1Z6 253 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 UBL4AP11441 157 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 UGT1A4P22310 534 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 U2AF2P26368 475 aaKnown RBP eCLIP3.9□□□□□ -1.78
USH2A-202ENST00000366942 UGT1A3P35503 534 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 PBX2P40425 430 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 GPR6P46095 362 aaPredicted RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 PCYT1AP49585 367 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 DEFA1P59665 94 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 DEFA3P59666 94 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 RAB10P61026 200 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 HERV-K104P61576 105 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 CSNK2BP67870 215 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 SMTNL2Q2TAL5 461 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 NKAPLQ5M9Q1 402 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 SPANXN2Q5MJ10 180 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 TXNRD3NBQ6F5E7 133 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 OLFML1Q6UWY5 402 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 RNF19BQ6ZMZ0 732 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 IQCF2Q8IXL9 164 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 LINC00471Q8N535 108 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 DHRSXQ8N5I4 330 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 UHMK1Q8TAS1 419 aaKnown RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 PHF10Q8WUB8 498 aaKnown RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 SLC25A43Q8WUT9 341 aaPredicted RBP3.9□□□□□ -1.78
USH2A-202ENST00000366942 SLC38A5Q8WUX1 472 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 RSC1A1Q92681 617 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 S100PBPQ96BU1 408 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 FBXO17Q96EF6 278 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 MVB12AQ96EY5 273 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 KCNC2Q96PR1 638 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 SLC22A4Q9H015 551 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 CRISPLD2Q9H0B8 497 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 MEAF6Q9HAF1 191 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 IL1RL2Q9HB29 575 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 UFSP2Q9NUQ7 469 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 GIN1Q9NXP7 522 aa3.9□□□□□ -1.78
USH2A-202ENST00000366942 TAC3Q9UHF0 121 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms