RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 TLR1Q15399 786 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 SLC2A7Q6PXP3 512 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 OLIG3Q7RTU3 272 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 PPP1R32Q7Z5V6 425 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 BPHLQ86WA6 291 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 MSRB3Q8IXL7 192 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 TMEM132CQ8N3T6 1108 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 ZSCAN1Q8NBB4 408 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 OR9A2Q8NGT5 310 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 ADAMTS17Q8TE56 1095 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 FGF11Q92914 225 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 COQ8BQ96D53 544 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 AURKBQ96GD4 344 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 MAGEB10Q96LZ2 347 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 CCT7Q99832 543 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 CLMPQ9H6B4 373 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 ZBTB20Q9HC78 741 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 LYRM4Q9HD34 91 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 MYNNQ9NPC7 610 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 NOP53Q9NZM5 478 aaKnown RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 GPN3Q9UHW5 284 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 C3orf18Q9UK00 162 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 ADAM29Q9UKF5 820 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 UTS2RQ9UKP6 389 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 TMEM200CA6NKL6 621 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SOCS6O14544 535 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SCAMP2O15127 329 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 KLK10O43240 276 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CTNSO60931 367 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SLC22A3O75751 556 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SEC24DO94855 1032 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 SNUPNO95149 360 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 CBX6O95503 412 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CCNYL3P0C7X3 344 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 RNH1P13489 461 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 SERPINB1P30740 379 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CPA2P48052 419 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CDK9P50750 372 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 SKP1P63208 163 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 KLF10Q13118 480 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 DNASE1L3Q13609 305 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 EXOSC7Q15024 291 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 NDUFA9Q16795 377 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PGS1Q32NB8 556 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 TIGD2Q4W5G0 525 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 AGKQ53H12 422 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 C10orf62Q5T681 223 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 BLOC1S3Q6QNY0 202 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 EGFL6Q8IUX8 553 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CPSF7Q8N684 471 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 SRFBP1Q8NEF9 429 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 OR7G2Q8NG99 324 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 OR2Y1Q8NGV0 311 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 LMF1Q96S06 567 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CCDC28BQ9BUN5 200 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 REEP4Q9H6H4 257 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SLC35C2Q9NQQ7 365 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SIRT3Q9NTG7 399 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 ARL8BQ9NVJ2 186 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 RIC8BQ9NVN3 520 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 NMRK1Q9NWW6 199 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 ASIC5Q9NY37 505 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SLC25A37Q9NYZ2 338 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 ANGPTL2Q9UKU9 493 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 MED12Q93074 2177 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 A0A088AWK7 358 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 TCRBV16S1A1N1A0A5B0 115 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 K7EM74 188 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SORBS2O94875 1100 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 GPR75O95800 540 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PGRP06401 933 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 TROVE2P10155 538 aaKnown RBP eCLIP3.76□□□□□ -1.81
LIG4-201ENST00000356922 NR2F6P10588 404 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PRKAR1AP10644 381 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 LIPCP11150 499 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 ZNF10P21506 573 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 PTPN4P29074 926 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SSTR4P31391 388 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 TSFMP43897 325 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 SRSF11Q05519 484 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 GAB1Q13480 694 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 RAPSNQ13702 412 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CEBPEQ15744 281 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 ANKRD37Q7Z713 158 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 APCDD1LQ8NCL9 501 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 NFAM1Q8NET5 270 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 OR11G2Q8NGC1 345 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 OR5AK3PQ8NH89 298 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 KLHL29Q96CT2 875 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 MAGED4Q96JG8 741 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 AMDHD1Q96NU7 426 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 DCBLD2Q96PD2 775 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 NPAS2Q99743 824 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 ZPBPQ9BS86 351 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CRB3Q9BUF7 120 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 NPLQ9BXD5 320 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 CXorf36Q9H7Y0 433 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 MKKSQ9NPJ1 570 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 THSD1Q9NS62 852 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 TAS2R7Q9NYW3 318 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms