RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 MARC2Q969Z3 335 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 SCMH1Q96GD3 660 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 PKP4Q99569 1192 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 KATNAL1Q9BW62 490 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 PRR14Q9BWN1 585 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 RNF32Q9H0A6 362 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 PPA2Q9H2U2 334 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 FOLH1BQ9HBA9 442 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 EMC7Q9NPA0 242 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 IL26Q9NPH9 171 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 MRPL39Q9NYK5 338 aaKnown RBP6.46□□□□□ -1.37
VPS39-202ENST00000348544 TESQ9UGI8 421 aaKnown RBP6.46□□□□□ -1.37
VPS39-202ENST00000348544 ZNF222Q9UK12 451 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 KCND3Q9UK17 655 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 CORO2BQ9UQ03 480 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 PCDHB9Q9Y5E1 797 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 TRAV6A0A075B6T7 132 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 TRBV5-4A0A0C4DH59 114 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 SERTM1A2A2V5 107 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 F5H5T6 163 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 RFXAPO00287 272 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 PRRG1O14668 218 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 CASKO14936 926 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 NDUFA2O43678 99 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 FZD6O60353 706 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 RAB36O95755 333 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 SOD1P00441 154 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 LALBAP00709 142 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 ADAP00813 363 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 RHCEP18577 417 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 SDHBP21912 280 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 ACRV1P26436 265 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 PSEN2P49810 448 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 XKP51811 444 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 PCBP3P57721 371 aaKnown RBP6.46□□□□□ -1.38
VPS39-202ENST00000348544 DSC1Q08554 894 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 CHIT1Q13231 466 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 BTN1A1Q13410 526 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 TPBGQ13641 420 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 HEPACAMQ14CZ8 416 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 ZMYND11Q15326 602 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 OCLNQ16625 522 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 SYT14P1Q58G82 188 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 CRB2Q5IJ48 1285 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 GARNL3Q5VVW2 1013 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 NCEH1Q6PIU2 408 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 B3GLCTQ6Y288 498 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 MACC1Q6ZN28 852 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 TAGAPQ8N103 731 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 LRRC17Q8N6Y2 441 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 PLA2G15Q8NCC3 412 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 HJURPQ8NCD3 748 aaPredicted RBP6.46□□□□□ -1.38
VPS39-202ENST00000348544 OR4K1Q8NGD4 311 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 OR52H1Q8NGJ2 320 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 OR8J1Q8NGP2 316 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 APOBEC4Q8WW27 367 aaKnown RBP6.46□□□□□ -1.38
VPS39-202ENST00000348544 HSD17B8Q92506 261 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 FGF11Q92914 225 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 RBPMSQ93062 196 aaKnown RBP6.46□□□□□ -1.38
VPS39-202ENST00000348544 FUBP3Q96I24 572 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS39-202ENST00000348544 LINC00052Q96N35 136 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 LINC00597Q9H2U6 94 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 RANBP3Q9H6Z4 567 aaPredicted RBP6.46□□□□□ -1.38
VPS39-202ENST00000348544 CCSER2Q9H7U1 834 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 C1GALT1Q9NS00 363 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 SPATA6Q9NWH7 488 aaPredicted RBP6.46□□□□□ -1.38
VPS39-202ENST00000348544 VPS29Q9UBQ0 182 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 MBD1Q9UIS9 605 aaPredicted RBP6.46□□□□□ -1.38
VPS39-202ENST00000348544 CCDC88CQ9P219 2028 aa6.46□□□□□ -1.38
VPS39-202ENST00000348544 PRR23AA6NEV1 266 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 H3BN98 237 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 CXCL11O14625 94 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 DVL2O14641 736 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 SLC30A4O14863 429 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 KHNYNO15037 678 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 TLX2O43763 284 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 B4GALT3O60512 393 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ATG13O75143 517 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 OR12D1P0DN82 309 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 JUPP14923 745 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ELK1P19419 428 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 PTBP1P26599 531 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS39-202ENST00000348544 FGF9P31371 208 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 GSTM5P46439 218 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ZNF81P51508 661 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 GBX2P52951 348 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 WNT4P56705 351 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 WDR5P61964 334 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 ARF5P84085 180 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 CDK6Q00534 326 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 PUDPQ08623 228 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ACSM2AQ08AH3 577 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 MRPL58Q14197 206 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 PRAMEF19Q5SWL8 479 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ACSM2BQ68CK6 577 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 CD200R1LQ6Q8B3 271 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 CASP12Q6UXS9 341 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ASB18Q6ZVZ8 466 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 UBE2R2Q712K3 238 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 HDDC2Q7Z4H3 204 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms