RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 RCBTB1Q8NDN9 531 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 TSGA13Q96PP4 275 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 RPF2Q9H7B2 306 aaKnown RBP12.11□□□□□ -0.47
SDC3-201ENST00000336798 FAM120CQ9NX05 1096 aaKnown RBP12.11□□□□□ -0.47
SDC3-201ENST00000336798 HSPB11Q9Y547 144 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 STC1P52823 247 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 GNMTQ14749 295 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 ZNF630Q2M218 657 aaPredicted RBP12.1□□□□□ -0.47
SDC3-201ENST00000336798 EXOC3L2Q2M3D2 409 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 EIF5AL1Q6IS14 154 aaKnown RBP12.1□□□□□ -0.47
SDC3-201ENST00000336798 PIAS4Q8N2W9 510 aaPredicted RBP12.1□□□□□ -0.47
SDC3-201ENST00000336798 NATD1Q8N6N6 113 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 SGCZQ96LD1 299 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 F2RL3Q96RI0 385 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 C2orf78A6NCI8 922 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 LRRN3E7EW58 273 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 ZNF14P17017 642 aaPredicted RBP12.1□□□□□ -0.47
SDC3-201ENST00000336798 ZNF81P51508 661 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 SLC18A1P54219 525 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 CAV3P56539 151 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 GPX6P59796 221 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 ASTE1Q2TB18 679 aaPredicted RBP12.1□□□□□ -0.47
SDC3-201ENST00000336798 LRIF1Q5T3J3 769 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 KIAA1614Q5VZ46 1190 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 LRRN1Q6UXK5 716 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 NPRL2Q8WTW4 380 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 DNTTIP1Q9H147 329 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 LRRN3Q9H3W5 708 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 TM9SF3Q9HD45 589 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 TXNRD2Q9NNW7 524 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 A0A1W2PQU0 124 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 RTCAO00442 366 aaKnown RBP12.1□□□□□ -0.47
SDC3-201ENST00000336798 TBX10O75333 385 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 PEPDP12955 493 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 CD72P21854 359 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 DLX2Q07687 328 aaPredicted RBP12.1□□□□□ -0.47
SDC3-201ENST00000336798 HSD17B12Q53GQ0 312 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 TMEM69Q5SWH9 247 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 FAM205BPQ63HN1 556 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 GRHL2Q6ISB3 625 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 PLD6Q8N2A8 252 aaKnown RBP12.1□□□□□ -0.47
SDC3-201ENST00000336798 TMEM234Q8WY98 164 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 SSX3Q99909 188 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 PCDHB16Q9NRJ7 776 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 PRSS51A0A1B0GVH4 220 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 C8BP07358 591 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 FPR1P21462 350 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 EPHA1P21709 976 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 IER5LQ5T953 404 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 KCTD13Q8WZ19 329 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 DIO2Q92813 273 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 PFDN5Q99471 154 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 MROQ9BYG7 248 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 KCNK13Q9HB14 408 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 F8A1P23610 371 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 RAB28P51157 221 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 ZNF805Q5CZA5 627 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 DRICH1Q6PGQ1 229 aaPredicted RBP12.1□□□□□ -0.47
SDC3-201ENST00000336798 EPGNQ6UW88 154 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 BADQ92934 168 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 ZBTB26Q9HCK0 441 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 TMEM248Q9NWD8 314 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 CXXC1Q9P0U4 656 aaPredicted RBP12.1□□□□□ -0.47
SDC3-201ENST00000336798 B4GALT7Q9UBV7 327 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 ADAM18Q9Y3Q7 739 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 CDH10Q9Y6N8 788 aa12.1□□□□□ -0.47
SDC3-201ENST00000336798 SLC22A2O15244 555 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 DUX1O43812 170 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 RAD1O60671 282 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 PRAMEF11O60813 436 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 SLC25A11Q02978 314 aaKnown RBP12.09□□□□□ -0.47
SDC3-201ENST00000336798 MALLQ13021 153 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 ZNF550Q7Z398 422 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 KIF18BQ86Y91 864 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 TXNDC5Q8NBS9 432 aaKnown RBP12.09□□□□□ -0.47
SDC3-201ENST00000336798 OR8K5Q8NH50 307 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 OR56A3Q8NH54 315 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 G6PC3Q9BUM1 346 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 POT1Q9NUX5 634 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 APOBEC3BQ9UH17 382 aaKnown RBP12.09□□□□□ -0.47
SDC3-201ENST00000336798 ACSL6Q9UKU0 697 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 HCN4Q9Y3Q4 1203 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 IQGAP1P46940 1657 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 FAM171A2A8MVW0 826 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 B8ZZF3 427 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 SHOXO15266 292 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 RBMS1P29558 406 aaKnown RBP12.09□□□□□ -0.47
SDC3-201ENST00000336798 FOXR2Q6PJQ5 311 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 XKR5Q6UX68 686 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 SHFQ7M4L6 423 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 PIGWQ7Z7B1 504 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 GPR137CQ8N3F9 429 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 SPHK2Q9NRA0 654 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 CSF2RAP15509 400 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 NR4A2P43354 598 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 DIO3P55073 304 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 SERINC3Q13530 473 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 TMEM35AQ53FP2 167 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 PM20D2Q8IYS1 436 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 AVL9Q8NBF6 648 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms