RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SYNMO15061 1565 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 CEP170BQ9Y4F5 1589 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-201ENST00000326004 MAGI2Q86UL8 1455 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 C5orf51A6NDU8 294 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 SHISA7A6NL88 538 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 TMCO5BA8MYB1 307 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 DDX39AO00148 427 aaKnown RBP2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF749O43361 778 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 KIAA0513O60268 411 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 STBD1O95210 358 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 CPNE6O95741 557 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 SFTPBP07988 381 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 SERPINF2P08697 491 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 MMP10P09238 476 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 NUDT17P0C025 328 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 CD1DP15813 335 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 HLA-DPA1P20036 260 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 PPP2R1AP30153 589 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ALDH3B1P43353 468 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 SMSP52788 366 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 UCP2P55851 309 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ACTN3Q08043 901 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-201ENST00000326004 HSPA14Q0VDF9 509 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 RIGQ13278 110 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 TSTA3Q13630 321 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ENPP2Q13822 863 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 SMC1AQ14683 1233 aaKnown RBP2.74□□□□□ -1.97
HMGB1-201ENST00000326004 HEPACAMQ14CZ8 416 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 OR1C1Q15619 314 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ECSCRQ19T08 205 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 KNOP1Q1ED39 458 aaKnown RBP2.74□□□□□ -1.97
HMGB1-201ENST00000326004 SNAI3Q3KNW1 292 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 POM121L1PQ3SYA9 428 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 DNAJC21Q5F1R6 531 aaKnown RBP2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF730Q6ZMV8 503 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 MCM10Q7L590 875 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 GTSCR1Q86UQ5 136 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 KCNMB4Q86W47 210 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 CATSPER3Q86XQ3 398 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 Q8N377 158 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 FBXW8Q8N3Y1 598 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 GVQW1Q8N7I0 195 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ST7LQ8TDW4 575 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 CHPT1Q8WUD6 406 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 UBTD2Q8WUN7 234 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 GLYATL1Q969I3 302 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 RAB40CQ96S21 281 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ATOH8Q96SQ7 321 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 SPAG8Q99932 426 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-201ENST00000326004 AGPAT1Q99943 283 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ANP32EQ9BTT0 268 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 NTMT1Q9BV86 223 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ACAT2Q9BWD1 397 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 OCR1Q9BZK8 76 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 SP140LQ9H930 580 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 WDR41Q9HAD4 459 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 PLEKHA3Q9HB20 300 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ZCCHC3Q9NUD5 404 aaKnown RBP2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ACOXLQ9NUZ1 547 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 THYN1Q9P016 225 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 HMG20BQ9P0W2 317 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 KLK13Q9UKR3 277 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 OR1A2Q9Y585 309 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 NPATQ14207 1427 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 FGD6Q6ZV73 1430 aa2.74□□□□□ -1.97
HMGB1-201ENST00000326004 ERICH3Q5RHP9 1530 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 MYO3AQ8NEV4 1616 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 A0A1W2PPR1 153 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 OR5H15A6NDH6 313 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 PDHXO00330 501 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 SLC28A1O00337 649 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 FBP2O00757 339 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 OGTO15294 1046 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 KERAO60938 352 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 OR6A2O95222 327 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 CHRNGP07510 517 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 EZRP15311 586 aaKnown RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF10P21506 573 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 GPX3P22352 226 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 SLC1A6P48664 564 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 NDUFV3P56181 108 aaKnown RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 FCHO2Q0JRZ9 810 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 PDE7AQ13946 482 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 GK2Q14410 553 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 KRTAP27-1Q3LI81 207 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 MUC21Q5SSG8 566 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 RAB12Q6IQ22 244 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 NEPROQ6NW34 567 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF343Q6P1L6 599 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 CNSTQ6PJW8 725 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 GPRIN3Q6ZVF9 776 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 MYPOPQ86VE0 399 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF410Q86VK4 478 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 SERPINA12Q8IW75 414 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 STHQ8IWL8 128 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 CNTN4Q8IWV2 1026 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF619Q8N2I2 560 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 ABHD12Q8N2K0 398 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 C17orf47Q8NEP4 570 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 OR6M1Q8NGM8 313 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms