RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TLDC1Q6P9B6 456 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 C6orf89Q6UWU4 347 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 NLKQ9UBE8 527 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 FAM198AQ9UFP1 575 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 SLC1A7O00341 560 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 EEDO75530 441 aaKnown RBP13.33□□□□□ -0.28
CSPG4-201ENST00000308508 ADRB3P13945 408 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 PFKLP17858 780 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 MAT2AP31153 395 aaKnown RBP13.33□□□□□ -0.28
CSPG4-201ENST00000308508 PRSS48Q7RTY5 328 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 TRIM46Q7Z4K8 759 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 MAPK15Q8TD08 544 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 KCTD13Q8WZ19 329 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 RRNAD1Q96FB5 475 aaKnown RBP13.33□□□□□ -0.28
CSPG4-201ENST00000308508 RNF11Q9Y3C5 154 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 ATG4BQ9Y4P1 393 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 YJEFN3A6XGL0 299 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF705GA8MUZ8 300 aaPredicted RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 ARPC5O15511 151 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 CSKP41240 450 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 LEPRP48357 1165 aaKnown RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 CASP7P55210 303 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 TAS2R20P59543 309 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 DUSP28Q4G0W2 176 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 WDR45BQ5MNZ6 344 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 USP50Q70EL3 339 aaPredicted RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 A8MUA0 341 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 TPT1P13693 172 aaKnown RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 BMXP51813 675 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 VARS2Q5ST30 1063 aaKnown RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF382Q96SR6 550 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 DNTTIP1Q9H147 329 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 IKZF4Q9H2S9 585 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 SARDHQ9UL12 918 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 NR2E3Q9Y5X4 410 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 BRINP1O60477 761 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 CMPK2Q5EBM0 449 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 LRRC73Q5JTD7 316 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 CFAP77Q6ZQR2 320 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 DCUN1D4Q92564 292 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 PTERQ96BW5 349 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 C17orf113A0A1B0GUU1 675 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 TRAPPC6AO75865 159 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 RETP07949 1114 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 VEGFCP49767 419 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 SEC13P55735 322 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 ACTR1AP61163 376 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 GRIK5Q16478 980 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 ARHGAP11AQ6P4F7 1023 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 TICAM1Q8IUC6 712 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 OR2T35Q8NGX2 323 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 LDAHQ9H6V9 325 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 ACOT13Q9NPJ3 140 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 TEX10Q9NXF1 929 aaPredicted RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 ZBTB48P10074 688 aaPredicted RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF136P52737 540 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 MLC1Q15049 377 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 PPA1Q15181 289 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 SLC15A4Q8N697 577 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 VGLL2Q8N8G2 317 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 FUBP3Q96I24 572 aaKnown RBP eCLIP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 TGM7Q96PF1 710 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 POLMQ9NP87 494 aaPredicted RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 SIRPGQ9P1W8 387 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 CD300AQ9UGN4 299 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 ADAMTS6Q9UKP5 1117 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 PCDHGA2Q9Y5H1 932 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 A0A1W2PPK0 400 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 PRAF2O60831 178 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 ENDOUP21128 410 aaKnown RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 RIDAP52758 137 aaKnown RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 CHRNA6Q15825 494 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 KLBQ86Z14 1044 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 MS4A15Q8N5U1 240 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 APMAPQ9HDC9 416 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 GRXCR1A8MXD5 290 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 CASC3O15234 703 aaKnown RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 LCKP06239 509 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 HOXD12P35452 270 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 C2CD4AQ8NCU7 369 aaPredicted RBP13.32□□□□□ -0.28
CSPG4-201ENST00000308508 QPCTLQ9NXS2 382 aa13.32□□□□□ -0.28
CSPG4-201ENST00000308508 PMM2O15305 246 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 TNFP01375 233 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ACP5P13686 325 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF30P17039 623 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 PITPNBP48739 271 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 GPR143P51810 404 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 LYSMD3Q7Z3D4 306 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 KCNA7Q96RP8 456 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 CDC6Q99741 560 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 TDP1Q9NUW8 608 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 FAM86C1Q9NVL1 165 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 C19orf25Q9UFG5 118 aaPredicted RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 NAP1L6A6NFF2 107 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 AMY2AP04746 511 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 RAC2P15153 192 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 PDGFRLQ15198 375 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 PTCHD3Q3KNS1 767 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 LIPJQ5W064 366 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ACBD7Q8N6N7 88 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms