RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TGM3Q08188 693 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 C1orf210Q8IVY1 113 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 TMEM105Q8N8V8 129 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 PAPD5Q8NDF8 572 aaKnown RBP15.56■□□□□ 0.08
USP4-201ENST00000265560 ELF4Q99607 663 aaPredicted RBP15.56■□□□□ 0.08
USP4-201ENST00000265560 BARD1Q99728 777 aaKnown RBP15.56■□□□□ 0.08
USP4-201ENST00000265560 SMURF2Q9HAU4 748 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 UBAP1Q9NZ09 502 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 HCN3Q9P1Z3 774 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 ENTPD4Q9Y227 616 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 CPED1A4D0V7 1026 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 FAM221BA6H8Z2 402 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 GNAO1P09471 354 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 XKP51811 444 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 CFHR1Q03591 330 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 MED21Q13503 144 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 ATP6AP1Q15904 470 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 ZDHHC21Q8IVQ6 265 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 ANKFN1Q8N957 763 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 CAPN10Q9HC96 672 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 SMIM10L1P0DMW3 83 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 CTSKP43235 329 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 DSTNP60981 165 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 CYBRD1Q53TN4 286 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 C6orf132Q5T0Z8 1188 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 RNF44Q7L0R7 432 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 ABHD13Q7L211 337 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 SPPL2AQ8TCT8 520 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 SLC38A5Q8WUX1 472 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 SMIM10Q96HG1 83 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 EPS8L2Q9H6S3 715 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 SH3GLB1Q9Y371 365 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 KCNE3Q9Y6H6 103 aa15.55■□□□□ 0.08
USP4-201ENST00000265560 B4GAT1O43505 415 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 E2F6O75461 281 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 HMGN2P05204 90 aaKnown RBP15.54■□□□□ 0.08
USP4-201ENST00000265560 LRRC74AQ0VAA2 488 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 SYPL1Q16563 259 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 PMS2CLQ68D20 193 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 TAMM41Q96BW9 452 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 RSPO3Q9BXY4 272 aaPredicted RBP15.54■□□□□ 0.08
USP4-201ENST00000265560 SYNDIG1Q9H7V2 258 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 AP3M1Q9Y2T2 418 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 ZNF780BQ9Y6R6 833 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 TMEM229AB2RXF0 380 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 TEAD4Q15561 434 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 PLK5Q496M5 336 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 EDAQ92838 391 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 SPRTNQ9H040 489 aaPredicted RBP15.54■□□□□ 0.08
USP4-201ENST00000265560 OR51I1Q9H343 314 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 ATXN7L1Q9ULK2 861 aaPredicted RBP15.54■□□□□ 0.08
USP4-201ENST00000265560 MAU2Q9Y6X3 613 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 A0A1B0GTW7 788 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 PRAMEF27A3QJZ7 478 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 HMGN4O00479 90 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 KRT75O95678 551 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 CSNK2A2P19784 350 aaPredicted RBP15.54■□□□□ 0.08
USP4-201ENST00000265560 PPIBP23284 216 aaKnown RBP15.54■□□□□ 0.08
USP4-201ENST00000265560 GSTM2P28161 218 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 BUD31P41223 144 aaPredicted RBP15.54■□□□□ 0.08
USP4-201ENST00000265560 TRA2BP62995 288 aaKnown RBP15.54■□□□□ 0.08
USP4-201ENST00000265560 KLHL35Q6PF15 583 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 RBM12BQ8IXT5 1001 aaKnown RBP15.54■□□□□ 0.08
USP4-201ENST00000265560 SERINC2Q96SA4 455 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 BDH2Q9BUT1 245 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 VCXQ9H320 206 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 TAS2R7Q9NYW3 318 aa15.54■□□□□ 0.08
USP4-201ENST00000265560 DLGAP1O14490 977 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 DEAF1O75398 565 aaPredicted RBP15.53■□□□□ 0.08
USP4-201ENST00000265560 SNAP29O95721 258 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 FRKP42685 505 aaPredicted RBP15.53■□□□□ 0.08
USP4-201ENST00000265560 ARRB1P49407 418 aaPredicted RBP15.53■□□□□ 0.08
USP4-201ENST00000265560 TNFRSF17Q02223 184 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 SAXO2Q658L1 398 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 ERICH5Q6P6B1 374 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 CEP68Q76N32 757 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 NEURL3Q96EH8 262 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 C10orf90Q96M02 699 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 ZNF681Q96N22 645 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 QRSL1Q9H0R6 528 aaKnown RBP15.53■□□□□ 0.08
USP4-201ENST00000265560 NEUROD4Q9HD90 331 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 SAMD4AQ9UPU9 718 aaKnown RBP15.53■□□□□ 0.08
USP4-201ENST00000265560 URADA6NGE7 173 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 FGF17O60258 216 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 GUCY1B2O75343 617 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 JRKO75564 520 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 GNSP15586 552 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 MLLT3P42568 568 aaPredicted RBP15.53■□□□□ 0.08
USP4-201ENST00000265560 HLA-BQ31612 363 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 OGFOD3Q6PK18 319 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 FAM111BQ6SJ93 734 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 C17orf82Q86X59 251 aaPredicted RBP15.53■□□□□ 0.08
USP4-201ENST00000265560 GOLM1Q8NBJ4 401 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 CYGBQ8WWM9 190 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 TMEM19Q96HH6 336 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 NUDT22Q9BRQ3 303 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 CORO2BQ9UQ03 480 aa15.53■□□□□ 0.08
USP4-201ENST00000265560 WBP11Q9Y2W2 641 aaKnown RBP15.53■□□□□ 0.08
USP4-201ENST00000265560 SUV39H1O43463 412 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 GALR3O60755 368 aaPredicted RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms