RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 FAM156AQ8NDB6 213 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 GAB3Q8WWW8 586 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 BMFQ96LC9 184 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 UHRF2Q96PU4 802 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 EEF1E1-BLOC1S5C9J1V9 151 aa13.4□□□□□ -0.27
CCDC88A-201ENST00000263630 CD52P31358 61 aa13.4□□□□□ -0.27
CCDC88A-201ENST00000263630 SDHAF4Q5VUM1 108 aa13.4□□□□□ -0.27
CCDC88A-201ENST00000263630 B3GLCTQ6Y288 498 aa13.4□□□□□ -0.27
CCDC88A-201ENST00000263630 PPIL3Q9H2H8 161 aaKnown RBP13.4□□□□□ -0.27
CCDC88A-201ENST00000263630 RPF2Q9H7B2 306 aaKnown RBP13.4□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC1A7O00341 560 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 DNAJB1P25685 340 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 PTH2RP49190 550 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 GAS6Q14393 721 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 LIPKQ5VXJ0 399 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 ANKRD22Q5VYY1 191 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 OR1F2PQ96R84 312 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 HDHD5Q9BXW7 423 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 PAQR5Q9NXK6 330 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC22A31A6NKX4 558 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 ARVCFO00192 962 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 TAS2R40P59535 323 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 RNF151Q2KHN1 245 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 GPR137CQ8N3F9 429 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 DPEP1P16444 411 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 GRIK5Q16478 980 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 PCDHAC1Q9H158 963 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC2A8Q9NY64 477 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 ZNF223Q9UK11 482 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 ACAD8Q9UKU7 415 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 YARS2Q9Y2Z4 477 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 VSTM2BA6NLU5 285 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 SOBPA7XYQ1 873 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 C9JVG2 144 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 F5H5P2 479 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 PIGRP01833 764 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 NDUFV2P19404 249 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 POU6F2P78424 691 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 KLF1Q13351 362 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 CYBRD1Q53TN4 286 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 ANKRD54Q6NXT1 300 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 LRFN4Q6PJG9 635 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 PLD5Q8N7P1 536 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 OR1J4Q8NGS1 313 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 ISOC1Q96CN7 298 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 HSH2DQ96JZ2 352 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 COQ10AQ96MF6 247 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 CERS4Q9HA82 394 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 LUZP4Q9P127 313 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 RNF212BA8MTL3 300 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 H0YAE9 185 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 SHOX2O60902 331 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 UQCRC2P22695 453 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 ZNF423Q2M1K9 1284 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 CLVS2Q5SYC1 327 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 ABHD12BQ7Z5M8 362 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 OR9K2Q8NGE7 335 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 OR9A2Q8NGT5 310 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 EMID1Q96A84 441 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 CNTNAP4Q9C0A0 1308 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 PREX2Q70Z35 1606 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 OR7A17O14581 309 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 TGM5O43548 720 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 RDH16O75452 317 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 LGR5O75473 907 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 RFPL2O75678 378 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 TAF9Q16594 264 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 PAN3Q58A45 887 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 OR51G2Q8NGK0 314 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 KCTD13Q8WZ19 329 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 CENPOQ9BU64 300 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 FANCGO15287 622 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 SPATA31D3P0C874 917 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 VIPR1P32241 457 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 SOX2P48431 317 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 PCK2Q16822 640 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 LINGO4Q6UY18 593 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 GDPD4Q6W3E5 623 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 SPATA31D4Q6ZUB0 917 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 OR4K15Q8NH41 348 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 CEP152O94986 1710 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 LRP5LA4QPB2 252 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 CELP19835 753 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 DLX2Q07687 328 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 ABHD18Q0P651 414 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 KCNC3Q14003 757 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 UPP1Q16831 310 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 LRRN4Q8WUT4 740 aa13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 ZBED3Q96IU2 234 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-201ENST00000263630 C11orf98E9PRG8 122 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 SCO1O75880 301 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 SOX14O95416 240 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 ITGB5P18084 799 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 AQP2P41181 271 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 ERVK-25P63136 954 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 NFATC2Q13469 925 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 PDLIM3Q53GG5 364 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 EOGTQ5NDL2 527 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 KIAA0930Q6ICG6 404 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 SLAIN1Q8ND83 568 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms