RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 CFAP206Q8IYR0 622 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 WDR20Q8TBZ3 569 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 NELL2Q99435 816 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 PIP5K1AQ99755 562 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 COQ7Q99807 217 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 POLR2J3Q9H1A7 115 aaKnown RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 MOV10Q9HCE1 1003 aaKnown RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 SEMA3GQ9NS98 782 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 TXNL4BQ9NX01 149 aaKnown RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 ITGB1BP2Q9UKP3 347 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 RUVBL1Q9Y265 456 aaKnown RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 CMAHPQ9Y471 501 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 ALG5Q9Y673 324 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 SCN5AQ14524 2016 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 C5orf58C9J3I9 102 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 TNFRSF10AO00220 468 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 LATO43561 262 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 IFNW1P05000 195 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 FCER2P06734 321 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 C8orf89P0DMQ9 161 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 IMPA1P29218 277 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 HLA-FP30511 346 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 XKP51811 444 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.35□□□□□ -0.431e-6■□□□□ 10.6
SNX1-201ENST00000261889 RETSATQ6NUM9 610 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 LRRC70Q7Z2Q7 622 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 SYT9Q86SS6 491 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 PHC2Q8IXK0 858 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 OR4F15Q8NGB8 312 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 SLC7A13Q8TCU3 470 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 VWCEQ96DN2 955 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 ALG14Q96F25 216 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 C2orf49Q9BVC5 232 aaPredicted RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 CHST8Q9H2A9 424 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 FAM120CQ9NX05 1096 aaKnown RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 OR51B4Q9Y5P0 310 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 A0A1W2PRU2 124 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 FAM172BPA6NC97 362 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 NEDD8-MDP1E9PL57 170 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 CASKO14936 926 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 GABRR2P28476 465 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 TBPL1P62380 186 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 GRIN2CQ14957 1233 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 CRB2Q5IJ48 1285 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 ASTLQ6HA08 431 aaPredicted RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 ERICH5Q6P6B1 374 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 TRMT11Q7Z4G4 463 aaKnown RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 IQCHQ86VS3 1027 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 TMC8Q8IU68 726 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 TRAPPC5Q8IUR0 188 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.35□□□□□ -0.43
SNX1-201ENST00000261889 AMER3Q8N944 861 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 OR2AP1Q8NGE2 309 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 TMEM159Q96B96 161 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 KLF16Q9BXK1 252 aaPredicted RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 CCDC59Q9P031 241 aaKnown RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 MRPS7Q9Y2R9 242 aaKnown RBP12.35□□□□□ -0.43
SNX1-201ENST00000261889 YIPF1Q9Y548 306 aa12.35□□□□□ -0.43
SNX1-201ENST00000261889 A0A1W2PRB8 838 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 OR6C75A6NL08 312 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 ANXA8P13928 327 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 SRP9P49458 86 aaKnown RBP12.34□□□□□ -0.43
SNX1-201ENST00000261889 SRP54P61011 504 aaKnown RBP12.34□□□□□ -0.43
SNX1-201ENST00000261889 GPR32P1Q8NGA4 272 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 OR4M1Q8NGD0 313 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 OR8J2Q8NGG1 315 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 OR52E4Q8NGH9 312 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 DEDD2Q8WXF8 326 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 TMEM19Q96HH6 336 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 TMCC3Q9ULS5 477 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 PADI2Q9Y2J8 665 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 URODP06132 367 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 FUT1P19526 365 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 RPS3P23396 243 aaKnown RBP eCLIP12.34□□□□□ -0.43
SNX1-201ENST00000261889 ARPC4P59998 168 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 CNIH2Q6PI25 160 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 PLET1Q6UQ28 207 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 TMEM150AQ86TG1 271 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 L3MBTL4Q8NA19 623 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 SLC38A5Q8WUX1 472 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 PIK3R3Q92569 461 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 UPRTQ96BW1 309 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 ZBED6CLQ96FA7 236 aaPredicted RBP12.34□□□□□ -0.43
SNX1-201ENST00000261889 FRMD6Q96NE9 622 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 CASD1Q96PB1 797 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 DEFB118Q96PH6 123 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 ZNF717Q9BY31 904 aaPredicted RBP12.34□□□□□ -0.43
SNX1-201ENST00000261889 SUV39H2Q9H5I1 410 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 FTSJ1Q9UET6 329 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 SSR3Q9UNL2 185 aa12.34□□□□□ -0.43
SNX1-201ENST00000261889 ANHXE9PGG2 379 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 SYN3O14994 580 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 INPPL1O15357 1258 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 IGSF6O95976 241 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 EIF2S1P05198 315 aaKnown RBP12.33□□□□□ -0.43
SNX1-201ENST00000261889 CELP19835 753 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 CD72P21854 359 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 TIA1P31483 386 aaKnown RBP eCLIP12.33□□□□□ -0.439e-6■□□□□ 8.2
SNX1-201ENST00000261889 PCGF2P35227 344 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 SCN1BQ07699 218 aa12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms