RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 VAC14Q08AM6 782 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 FADDQ13158 208 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 CEBPEQ15744 281 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 ZNF528Q3MIS6 628 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 ENPP6Q6UWR7 440 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 USP53Q70EK8 1073 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 AMIGO2Q86SJ2 522 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 TMEM126BQ8IUX1 230 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 CCDC116Q8IYX3 515 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 OR2I1PQ8NGU4 316 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 ZFP28Q8NHY6 868 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 CEP76Q8TAP6 659 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 PPWD1Q96BP3 646 aaKnown RBP15.92■□□□□ 0.14
CLN3-252ENST00000636907 ZNF681Q96N22 645 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 ZNF285Q96NJ3 590 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 KLHL4Q9C0H6 718 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 CHRNA10Q9GZZ6 450 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 RAD21L1Q9H4I0 556 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 TMEM9Q9P0T7 183 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 ADAMTS9Q9P2N4 1935 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 FAF1Q9UNN5 650 aaPredicted RBP15.92■□□□□ 0.14
CLN3-252ENST00000636907 LY6G6EA0A0G2JKS1 128 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 SGK494L7N484 410 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 YKT6O15498 198 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 SIGLEC6O43699 453 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 MED26O95402 600 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 CSNK2A2P19784 350 aaPredicted RBP15.91■□□□□ 0.14
CLN3-252ENST00000636907 PTGER1P34995 402 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 GPC1P35052 558 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 VEZF1Q14119 521 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 SPIDRQ14159 915 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 LPAL2Q16609 132 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 NKG7Q16617 165 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 SPDYE7PQ495Y7 208 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 TRIM61Q5EBN2 209 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 GCNT6Q5T4J0 391 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 IZUMO2Q6UXV1 221 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 PLXDC1Q8IUK5 500 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 CA13Q8N1Q1 262 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 DNAJC9Q8WXX5 260 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 RNF145Q96MT1 663 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 VCX3BQ9H321 246 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 GIMAP4Q9NUV9 329 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 MS4A12Q9NXJ0 267 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 PSME2Q9UL46 239 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 LRRC42Q9Y546 428 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 ZNF780BQ9Y6R6 833 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 U3KQA8 63 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 NCOR1O75376 2440 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 ARID1BQ8NFD5 2236 aaPredicted RBP15.91■□□□□ 0.14
CLN3-252ENST00000636907 CABIN1Q9Y6J0 2220 aa15.91■□□□□ 0.14
CLN3-252ENST00000636907 MN1Q10571 1320 aaPredicted RBP15.9■□□□□ 0.14
CLN3-252ENST00000636907 PRKD3O94806 890 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 CAPNS1P04632 268 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 AVPR2P30518 371 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 TLX1P31314 330 aaPredicted RBP15.9■□□□□ 0.14
CLN3-252ENST00000636907 PCGF2P35227 344 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 CCT3P49368 545 aaKnown RBP15.9■□□□□ 0.14
CLN3-252ENST00000636907 CCT8P50990 548 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 SIM1P81133 766 aaPredicted RBP15.9■□□□□ 0.14
CLN3-252ENST00000636907 ANGPT1Q15389 498 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 NR0B2Q15466 257 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 GRAMD1BQ3KR37 738 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 LRRC23Q53EV4 343 aaPredicted RBP15.9■□□□□ 0.14
CLN3-252ENST00000636907 WLSQ5T9L3 541 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 OR52E8Q6IFG1 317 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 C6orf120Q7Z4R8 191 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 SPRED1Q7Z699 444 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 RABEPKQ7Z6M1 372 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 C11orf65Q8NCR3 313 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 OR9A4Q8NGU2 314 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 CHID1Q9BWS9 393 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 UGT2B28Q9BY64 529 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 ANKHQ9HCJ1 492 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 AGPAT4Q9NRZ5 378 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 OLAHQ9NV23 265 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 SLC6A14Q9UN76 642 aa15.9■□□□□ 0.14
CLN3-252ENST00000636907 FAM149AA5PLN7 773 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 PEX1O43933 1283 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 RDH16O75452 317 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 MT-ND1P03886 318 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 RAP2AP10114 183 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 FASP25445 335 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 KDELR2P33947 212 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 SEPHS1P49903 392 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 RPS26P62854 115 aaKnown RBP15.89■□□□□ 0.13
CLN3-252ENST00000636907 SHC2P98077 582 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 CHRNB3Q05901 458 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 KCNAB1Q14722 419 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 FAM98BQ52LJ0 330 aaKnown RBP15.89■□□□□ 0.13
CLN3-252ENST00000636907 SFT2D3Q587I9 215 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 SNAP47Q5SQN1 464 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 GUSBP11Q6P575 273 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 SLC23A3Q6PIS1 610 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 GALNT10Q86SR1 603 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 CARFQ8N187 725 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 TMEM52Q8NDY8 209 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 ADCY4Q8NFM4 1077 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 ZNF184Q99676 751 aaPredicted RBP15.89■□□□□ 0.13
CLN3-252ENST00000636907 NPLQ9BXD5 320 aaPredicted RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms